Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RNF111Q6ZNA4 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.91■■□□□ 1.42
RNF111Q6ZNA4 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.91■■□□□ 1.42
RNF111Q6ZNA4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RNF111Q6ZNA4 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RNF111Q6ZNA4 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
RNF111Q6ZNA4 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF111Q6ZNA4 MIR7108-201ENST00000614319 87 ntBASIC23.9■■□□□ 1.42
RNF111Q6ZNA4 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
RNF111Q6ZNA4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF111Q6ZNA4 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
RNF111Q6ZNA4 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.89■■□□□ 1.42
RNF111Q6ZNA4 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
RNF111Q6ZNA4 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.89■■□□□ 1.41
RNF111Q6ZNA4 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
RNF111Q6ZNA4 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
RNF111Q6ZNA4 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.89■■□□□ 1.41
RNF111Q6ZNA4 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.89■■□□□ 1.41
RNF111Q6ZNA4 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RNF111Q6ZNA4 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
RNF111Q6ZNA4 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
RNF111Q6ZNA4 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RNF111Q6ZNA4 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.88■■□□□ 1.41
RNF111Q6ZNA4 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
RNF111Q6ZNA4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
RNF111Q6ZNA4 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
RNF111Q6ZNA4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
RNF111Q6ZNA4 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RNF111Q6ZNA4 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RNF111Q6ZNA4 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RNF111Q6ZNA4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
RNF111Q6ZNA4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
RNF111Q6ZNA4 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.86■■□□□ 1.41
RNF111Q6ZNA4 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
RNF111Q6ZNA4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.86■■□□□ 1.41
RNF111Q6ZNA4 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
RNF111Q6ZNA4 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
RNF111Q6ZNA4 AC100797.4-201ENST00000631653 1827 ntBASIC23.86■■□□□ 1.41
RNF111Q6ZNA4 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
RNF111Q6ZNA4 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
RNF111Q6ZNA4 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
RNF111Q6ZNA4 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.85■■□□□ 1.41
RNF111Q6ZNA4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.85■■□□□ 1.41
RNF111Q6ZNA4 DUX4L11-201ENST00000611504 1267 ntBASIC23.85■■□□□ 1.41
RNF111Q6ZNA4 DUX4L12-201ENST00000614593 1267 ntBASIC23.85■■□□□ 1.41
RNF111Q6ZNA4 DUX4L14-201ENST00000621227 1267 ntBASIC23.85■■□□□ 1.41
RNF111Q6ZNA4 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.85■■□□□ 1.41
RNF111Q6ZNA4 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
RNF111Q6ZNA4 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.84■■□□□ 1.41
RNF111Q6ZNA4 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
RNF111Q6ZNA4 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
RNF111Q6ZNA4 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.84■■□□□ 1.41
RNF111Q6ZNA4 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
RNF111Q6ZNA4 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.83■■□□□ 1.41
RNF111Q6ZNA4 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RNF111Q6ZNA4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.83■■□□□ 1.41
RNF111Q6ZNA4 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
RNF111Q6ZNA4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
RNF111Q6ZNA4 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
RNF111Q6ZNA4 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RNF111Q6ZNA4 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
RNF111Q6ZNA4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.81■■□□□ 1.4
RNF111Q6ZNA4 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.81■■□□□ 1.4
RNF111Q6ZNA4 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
RNF111Q6ZNA4 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
RNF111Q6ZNA4 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RNF111Q6ZNA4 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.8■■□□□ 1.4
RNF111Q6ZNA4 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.8■■□□□ 1.4
RNF111Q6ZNA4 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.8■■□□□ 1.4
RNF111Q6ZNA4 DUSP8P4-201ENST00000399538 1761 ntBASIC23.79■■□□□ 1.4
RNF111Q6ZNA4 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.79■■□□□ 1.4
RNF111Q6ZNA4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
RNF111Q6ZNA4 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RNF111Q6ZNA4 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
RNF111Q6ZNA4 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RNF111Q6ZNA4 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 DUX4L13-201ENST00000554103 1267 ntBASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 DUX4L15-201ENST00000611059 1267 ntBASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 DUX4L23-201ENST00000615195 1269 ntBASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 DUX4L24-201ENST00000617576 1269 ntBASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 DUX4L22-201ENST00000618238 1269 ntBASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 DUX4L20-201ENST00000619712 1269 ntBASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 DUX4L21-201ENST00000622058 1269 ntBASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 DUX4L10-201ENST00000622460 1267 ntBASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 DUX4L25-201ENST00000624915 1269 ntBASIC23.78■■□□□ 1.4
RNF111Q6ZNA4 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.77■■□□□ 1.4
RNF111Q6ZNA4 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RNF111Q6ZNA4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.77■■□□□ 1.4
RNF111Q6ZNA4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.77■■□□□ 1.4
RNF111Q6ZNA4 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
RNF111Q6ZNA4 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
RNF111Q6ZNA4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RNF111Q6ZNA4 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RNF111Q6ZNA4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RNF111Q6ZNA4 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RNF111Q6ZNA4 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms