Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SOX3P41225 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.18■■□□□ 1.3
SOX3P41225 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SOX3P41225 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SOX3P41225 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SOX3P41225 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.18■■□□□ 1.3
SOX3P41225 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
SOX3P41225 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
SOX3P41225 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
SOX3P41225 GPX1-201ENST00000419349 1106 ntBASIC23.17■■□□□ 1.3
SOX3P41225 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.17■■□□□ 1.3
SOX3P41225 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
SOX3P41225 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SOX3P41225 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SOX3P41225 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SOX3P41225 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SOX3P41225 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
SOX3P41225 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SOX3P41225 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.15■■□□□ 1.3
SOX3P41225 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SOX3P41225 AC022413.1-201ENST00000624602 984 ntBASIC23.15■■□□□ 1.3
SOX3P41225 BRD4-212ENST00000630599 726 ntTSL 2 BASIC23.15■■□□□ 1.3
SOX3P41225 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.15■■□□□ 1.3
SOX3P41225 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.14■■□□□ 1.3
SOX3P41225 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SOX3P41225 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SOX3P41225 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SOX3P41225 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
SOX3P41225 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
SOX3P41225 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
SOX3P41225 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.13■■□□□ 1.29
SOX3P41225 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.12■■□□□ 1.29
SOX3P41225 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
SOX3P41225 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.12■■□□□ 1.29
SOX3P41225 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
SOX3P41225 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SOX3P41225 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.11■■□□□ 1.29
SOX3P41225 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SOX3P41225 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SOX3P41225 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
SOX3P41225 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SOX3P41225 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.1■■□□□ 1.29
SOX3P41225 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.1■■□□□ 1.29
SOX3P41225 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SOX3P41225 BX255925.1-201ENST00000566954 1854 ntBASIC23.1■■□□□ 1.29
SOX3P41225 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.1■■□□□ 1.29
SOX3P41225 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.09■■□□□ 1.29
SOX3P41225 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.09■■□□□ 1.29
SOX3P41225 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SOX3P41225 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.08■■□□□ 1.29
SOX3P41225 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SOX3P41225 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
SOX3P41225 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
SOX3P41225 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SOX3P41225 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
SOX3P41225 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.07■■□□□ 1.28
SOX3P41225 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
SOX3P41225 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.07■■□□□ 1.28
SOX3P41225 AC060814.1-201ENST00000554326 538 ntBASIC23.07■■□□□ 1.28
SOX3P41225 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.07■■□□□ 1.28
SOX3P41225 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SOX3P41225 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.07■■□□□ 1.28
SOX3P41225 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.07■■□□□ 1.28
SOX3P41225 AC018358.1-201ENST00000631079 1402 ntBASIC23.07■■□□□ 1.28
SOX3P41225 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.07■■□□□ 1.28
SOX3P41225 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SOX3P41225 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SOX3P41225 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SOX3P41225 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SOX3P41225 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SOX3P41225 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.05■■□□□ 1.28
SOX3P41225 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SOX3P41225 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
SOX3P41225 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
SOX3P41225 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.04■■□□□ 1.28
SOX3P41225 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SOX3P41225 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.04■■□□□ 1.28
SOX3P41225 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SOX3P41225 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
SOX3P41225 RNF126P1-201ENST00000567452 1320 ntBASIC23.04■■□□□ 1.28
SOX3P41225 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SOX3P41225 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SOX3P41225 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
SOX3P41225 RARRES2P2-201ENST00000394842 485 ntBASIC23.03■■□□□ 1.28
SOX3P41225 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
SOX3P41225 AC126177.7-201ENST00000547904 679 ntBASIC23.03■■□□□ 1.28
SOX3P41225 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
SOX3P41225 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SOX3P41225 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SOX3P41225 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.02■■□□□ 1.28
SOX3P41225 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SOX3P41225 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
SOX3P41225 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
SOX3P41225 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SOX3P41225 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SOX3P41225 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.01■■□□□ 1.27
SOX3P41225 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.01■■□□□ 1.27
SOX3P41225 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.01■■□□□ 1.27
SOX3P41225 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
SOX3P41225 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms