Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC19.08■□□□□ 0.641e-8■■■■□ 25.1
YBX3P16989 MRPL19-203ENST00000409374 1076 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.31e-8■■■■□ 25.1
YBX3P16989 MRPL19-202ENST00000393909 3479 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.781e-8■■■■□ 25.1
YBX3P16989 EIF2B3-202ENST00000372182 705 ntTSL 326■■□□□ 1.752e-8■■■■□ 25.1
YBX3P16989 EIF2B3-206ENST00000480675 1082 ntTSL 524.42■■□□□ 1.52e-8■■■■□ 25.1
YBX3P16989 EIF2B3-205ENST00000477953 828 ntTSL 521.33■■□□□ 1.012e-8■■■■□ 25.1
YBX3P16989 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC7.98□□□□□ -1.131e-6■■■■□ 25.1
YBX3P16989 MAP4K4-209ENST00000421882 3416 ntTSL 59.22□□□□□ -0.935e-7■■■■□ 25.1
YBX3P16989 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.227e-7■■■■□ 25.1
YBX3P16989 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.355e-7■■■■□ 25
YBX3P16989 NCAPD3-206ENST00000527944 773 ntAPPRIS ALT2 TSL 212.2□□□□□ -0.465e-8■■■■□ 25
YBX3P16989 CTDSP2-205ENST00000549039 797 ntTSL 216.68■□□□□ 0.262e-7■■■■□ 25
YBX3P16989 ZMYM4-204ENST00000470175 427 ntTSL 57.66□□□□□ -1.189e-8■■■■□ 25
YBX3P16989 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.988e-8■■■■□ 25
YBX3P16989 BAX-212ENST00000515540 300 ntTSL 319.01■□□□□ 0.638e-8■■■■□ 25
YBX3P16989 UTP18-206ENST00000583205 664 ntTSL 39.24□□□□□ -0.938e-8■■■■□ 25
YBX3P16989 UTP18-203ENST00000579261 567 ntTSL 57.33□□□□□ -1.248e-8■■■■□ 25
YBX3P16989 UTP18-205ENST00000582832 464 ntTSL 37.33□□□□□ -1.248e-8■■■■□ 25
YBX3P16989 UTP18-202ENST00000508506 592 ntTSL 37.12□□□□□ -1.278e-8■■■■□ 25
YBX3P16989 NAF1-205ENST00000509434 385 ntTSL 3 BASIC6.6□□□□□ -1.354e-7■■■■□ 25
YBX3P16989 DSCR3-203ENST00000399000 4398 ntTSL 1 (best)14.11□□□□□ -0.159e-7■■■■□ 25
YBX3P16989 DSCR3-201ENST00000309117 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.429e-7■■■■□ 25
YBX3P16989 HIRIP3-203ENST00000563680 755 ntTSL 332.54■■■□□ 2.85e-8■■■■□ 25
YBX3P16989 HIRIP3-207ENST00000568880 738 ntTSL 232.49■■■□□ 2.795e-8■■■■□ 25
YBX3P16989 ABHD14A-ACY1-209ENST00000635952 853 ntTSL 326.85■■□□□ 1.895e-8■■■■□ 25
YBX3P16989 ABHD14A-ACY1-203ENST00000486081 1135 ntTSL 526.8■■□□□ 1.885e-8■■■■□ 25
YBX3P16989 ABHD14A-ACY1-222ENST00000637222 1048 ntTSL 525.54■■□□□ 1.685e-8■■■■□ 25
YBX3P16989 ACY1-216ENST00000636556 1059 ntTSL 524.38■■□□□ 1.495e-8■■■■□ 25
YBX3P16989 ACY1-222ENST00000637209 687 ntTSL 523.32■■□□□ 1.325e-8■■■■□ 25
YBX3P16989 ACY1-225ENST00000637460 884 ntTSL 323.15■■□□□ 1.35e-8■■■■□ 25
YBX3P16989 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.15e-8■■■■□ 25
YBX3P16989 ACY1-202ENST00000464587 538 ntTSL 321.74■■□□□ 1.075e-8■■■■□ 25
YBX3P16989 ACY1-228ENST00000638096 1466 nt20.07■□□□□ 0.85e-8■■■■□ 25
YBX3P16989 ACY1-224ENST00000637349 703 ntTSL 520.05■□□□□ 0.85e-8■■■■□ 25
YBX3P16989 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC19.42■□□□□ 0.75e-8■■■■□ 25
YBX3P16989 HIRIP3-202ENST00000563053 1686 ntTSL 219.31■□□□□ 0.685e-8■■■■□ 25
YBX3P16989 ACY1-223ENST00000637251 1739 ntTSL 518.94■□□□□ 0.625e-8■■■■□ 25
YBX3P16989 ACY1-203ENST00000465121 1600 ntTSL 218.92■□□□□ 0.625e-8■■■■□ 25
YBX3P16989 ABHD14A-ACY1-211ENST00000636085 1188 ntTSL 516.95■□□□□ 0.35e-8■■■■□ 25
YBX3P16989 HIRIP3-206ENST00000566471 607 ntTSL 316.92■□□□□ 0.35e-8■■■■□ 25
YBX3P16989 ABHD14A-ACY1-205ENST00000635785 1060 ntTSL 516.88■□□□□ 0.295e-8■■■■□ 25
YBX3P16989 ACY1-205ENST00000469863 755 ntTSL 315.82■□□□□ 0.125e-8■■■■□ 25
YBX3P16989 ABHD14A-ACY1-223ENST00000637461 566 ntTSL 514.19□□□□□ -0.145e-8■■■■□ 25
YBX3P16989 HIRIP3-201ENST00000279392 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.485e-8■■■■□ 25
YBX3P16989 HIRIP3-205ENST00000565996 582 ntTSL 212□□□□□ -0.495e-8■■■■□ 25
YBX3P16989 LMBR1-216ENST00000477983 605 ntTSL 28.09□□□□□ -1.115e-8■■■■□ 25
YBX3P16989 Y_RNA.409-201ENST00000383990 98 ntBASIC5.94□□□□□ -1.465e-8■■■■□ 25
YBX3P16989 Y_RNA.260-201ENST00000364628 101 ntBASIC1.01□□□□□ -2.255e-8■■■■□ 25
YBX3P16989 GAS6-202ENST00000476291 537 ntTSL 228.24■■■□□ 2.119e-7■■■■□ 25
YBX3P16989 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.799e-7■■■■□ 25
YBX3P16989 ARIH1-206ENST00000564062 612 ntTSL 341.35■■■■■ 4.211e-6■■■■□ 24.9
YBX3P16989 SMIM7-217ENST00000599310 1123 ntTSL 221.67■■□□□ 1.063e-8■■■■□ 24.9
YBX3P16989 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC16.92■□□□□ 0.33e-8■■■■□ 24.9
YBX3P16989 AC008764.4-204ENST00000595505 400 ntTSL 214.26□□□□□ -0.133e-8■■■■□ 24.9
YBX3P16989 SMIM7-220ENST00000602194 534 ntTSL 314.12□□□□□ -0.153e-8■■■■□ 24.9
YBX3P16989 SMIM7-214ENST00000597711 1075 ntTSL 1 (best) BASIC14.12□□□□□ -0.153e-8■■■■□ 24.9
YBX3P16989 SMIM7-216ENST00000598278 603 ntTSL 313.99□□□□□ -0.173e-8■■■■□ 24.9
YBX3P16989 SMIM7-207ENST00000481671 1126 ntTSL 213.31□□□□□ -0.283e-8■■■■□ 24.9
YBX3P16989 AC008764.4-206ENST00000594509 479 ntTSL 212.82□□□□□ -0.363e-8■■■■□ 24.9
YBX3P16989 SMIM7-206ENST00000465250 1281 ntTSL 212.77□□□□□ -0.373e-8■■■■□ 24.9
YBX3P16989 SMIM7-213ENST00000594662 1076 ntTSL 212.47□□□□□ -0.413e-8■■■■□ 24.9
YBX3P16989 SMIM7-219ENST00000600740 580 ntTSL 312.38□□□□□ -0.433e-8■■■■□ 24.9
YBX3P16989 AC008764.4-201ENST00000593962 468 ntTSL 212.06□□□□□ -0.483e-8■■■■□ 24.9
YBX3P16989 SMIM7-221ENST00000627144 2171 ntTSL 1 (best) BASIC11.39□□□□□ -0.593e-8■■■■□ 24.9
YBX3P16989 SMIM7-211ENST00000593409 1757 ntTSL 511.16□□□□□ -0.623e-8■■■■□ 24.9
YBX3P16989 AC008764.4-205ENST00000593459 222 ntAPPRIS P1 TSL 311.11□□□□□ -0.633e-8■■■■□ 24.9
YBX3P16989 SMIM7-209ENST00000487803 2190 ntTSL 1 (best)11.04□□□□□ -0.643e-8■■■■□ 24.9
YBX3P16989 SMIM7-208ENST00000487416 2776 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.693e-8■■■■□ 24.9
YBX3P16989 SMIM7-202ENST00000397349 1122 ntTSL 210.34□□□□□ -0.753e-8■■■■□ 24.9
YBX3P16989 SMIM7-215ENST00000597781 975 ntTSL 29.53□□□□□ -0.883e-8■■■■□ 24.9
YBX3P16989 AC008764.4-202ENST00000601636 437 ntTSL 38.1□□□□□ -1.113e-8■■■■□ 24.9
YBX3P16989 SMIM7-210ENST00000593404 1065 ntTSL 27.51□□□□□ -1.213e-8■■■■□ 24.9
YBX3P16989 AC008764.4-203ENST00000593991 548 ntTSL 26.6□□□□□ -1.353e-8■■■■□ 24.9
YBX3P16989 RALY-206ENST00000448364 1204 ntTSL 232.39■■■□□ 2.781e-9■■■■□ 24.9
YBX3P16989 RALY-208ENST00000488227 430 ntTSL 317.46■□□□□ 0.391e-9■■■■□ 24.9
YBX3P16989 GTF3C1-204ENST00000564664 933 ntTSL 516.44■□□□□ 0.222e-8■■■■□ 24.8
YBX3P16989 GTF3C1-213ENST00000571886 721 ntTSL 313.46□□□□□ -0.252e-8■■■■□ 24.8
YBX3P16989 GTF3C1-210ENST00000569394 566 ntTSL 311.74□□□□□ -0.532e-8■■■■□ 24.8
YBX3P16989 SZRD1-201ENST00000401088 3636 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.458e-9■■■■□ 24.8
YBX3P16989 SZRD1-202ENST00000401089 3447 ntTSL 2 BASIC11.02□□□□□ -0.658e-9■■■■□ 24.8
YBX3P16989 SZRD1-210ENST00000492354 3401 ntTSL 1 (best) BASIC10.55□□□□□ -0.728e-9■■■■□ 24.8
YBX3P16989 RAB3GAP2-207ENST00000478976 575 ntTSL 411.32□□□□□ -0.61e-6■■■■□ 24.8
YBX3P16989 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC14.34□□□□□ -0.112e-6■■■■□ 24.8
YBX3P16989 ATP2B2-202ENST00000360273 8962 ntTSL 5 BASIC12.27□□□□□ -0.452e-6■■■■□ 24.8
YBX3P16989 ATP2B2-204ENST00000397077 8964 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.62e-6■■■■□ 24.8
YBX3P16989 ATP2B2-205ENST00000452124 4016 ntTSL 1 (best)11.04□□□□□ -0.642e-6■■■■□ 24.8
YBX3P16989 ATP2B2-201ENST00000352432 8593 ntTSL 1 (best) BASIC10.08□□□□□ -0.82e-6■■■■□ 24.8
YBX3P16989 ATP2B2-203ENST00000383800 8900 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.812e-6■■■■□ 24.8
YBX3P16989 ATP2B2-206ENST00000460129 9101 ntTSL 59.84□□□□□ -0.832e-6■■■■□ 24.8
YBX3P16989 NUP54-205ENST00000507257 1938 ntTSL 518.15■□□□□ 0.59e-8■■■■□ 24.8
YBX3P16989 NUP54-202ENST00000502850 1604 ntTSL 1 (best)13.61□□□□□ -0.239e-8■■■■□ 24.8
YBX3P16989 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.259e-8■■■■□ 24.8
YBX3P16989 RELA-217ENST00000531484 2251 ntTSL 211.83□□□□□ -0.523e-7■■■■□ 24.8
YBX3P16989 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.36e-11■■■■□ 24.8
YBX3P16989 SNX5-206ENST00000469704 696 ntTSL 335.18■■■■□ 3.221e-6■■■■□ 24.8
YBX3P16989 ZMIZ1-204ENST00000478357 4252 ntTSL 29.95□□□□□ -0.829e-8■■■■□ 24.7
YBX3P16989 AL139260.3-204ENST00000621281 609 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.283e-8■■■■□ 24.7
YBX3P16989 AL139260.3-202ENST00000454994 2381 ntTSL 214.14□□□□□ -0.153e-8■■■■□ 24.7
YBX3P16989 AL139260.3-201ENST00000489803 3231 ntTSL 210.18□□□□□ -0.783e-8■■■■□ 24.7
YBX3P16989 AL139260.3-203ENST00000489575 477 ntTSL 27.53□□□□□ -1.23e-8■■■■□ 24.7
Retrieved 100 of 29,075 protein–RNA pairs in 685.6 ms