RNA–Protein interactions for RNA: ENST00000477983.1

LMBR1-216, Transcript of limb development membrane protein 1, humanhuman

TSL 2

Gene LMBR1, Length 605 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-216ENST00000477983 AEBP2Q6ZN18 517 aaPredicted RBP29.42■■■□□ 2.3
LMBR1-216ENST00000477983 CHIC1Q5VXU3 224 aa28.23■■■□□ 2.11
LMBR1-216ENST00000477983 SENP3Q9H4L4 574 aaPredicted RBP25.05■■□□□ 1.6
LMBR1-216ENST00000477983 PHF23Q9BUL5 403 aaPredicted RBP24.78■■□□□ 1.56
LMBR1-216ENST00000477983 FOXD1Q16676 465 aa23.32■■□□□ 1.32
LMBR1-216ENST00000477983 PLPPR3Q6T4P5 718 aa22.67■■□□□ 1.22
LMBR1-216ENST00000477983 PPP6R1Q9UPN7 881 aa22.03■■□□□ 1.12
LMBR1-216ENST00000477983 ADRA2BP18089 450 aa21.94■■□□□ 1.1
LMBR1-216ENST00000477983 PIAS4Q8N2W9 510 aaPredicted RBP21.81■■□□□ 1.08
LMBR1-216ENST00000477983 MSH5O43196 834 aa21.72■■□□□ 1.07
LMBR1-216ENST00000477983 POTEDQ86YR6 584 aa21.71■■□□□ 1.07
LMBR1-216ENST00000477983 SCAF1Q9H7N4 1312 aaKnown RBP20.11■□□□□ 0.81
LMBR1-216ENST00000477983 MAPK8IP2Q13387 824 aaPredicted RBP20.07■□□□□ 0.8
LMBR1-216ENST00000477983 DMRT2Q9Y5R5 561 aa19.93■□□□□ 0.78
LMBR1-216ENST00000477983 PPP4R3CPQ6ZMV5 832 aa19.91■□□□□ 0.78
LMBR1-216ENST00000477983 CNKSR2Q8WXI2 1034 aa19.49■□□□□ 0.71
LMBR1-216ENST00000477983 HOXD11P31277 338 aaPredicted RBP19.33■□□□□ 0.68
LMBR1-216ENST00000477983 RNF216Q9NWF9 866 aaPredicted RBP19.25■□□□□ 0.67
LMBR1-216ENST00000477983 NCBP3Q53F19 620 aaKnown RBP19.22■□□□□ 0.67
LMBR1-216ENST00000477983 DCAF8L1A6NGE4 600 aa18.97■□□□□ 0.63
LMBR1-216ENST00000477983 NPM3O75607 178 aaKnown RBP18.94■□□□□ 0.62
LMBR1-216ENST00000477983 KCNA4P22459 653 aa18.8■□□□□ 0.6
LMBR1-216ENST00000477983 CACNB1Q02641 598 aaPredicted RBP18.79■□□□□ 0.6
LMBR1-216ENST00000477983 DNAJC5BQ9UF47 199 aa18.68■□□□□ 0.58
LMBR1-216ENST00000477983 RNF39Q9H2S5 420 aa18.57■□□□□ 0.56
LMBR1-216ENST00000477983 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.34■□□□□ 0.532e-6■□□□□ 10.4
LMBR1-216ENST00000477983 C1QBPQ07021 282 aaKnown RBP18.33■□□□□ 0.52
LMBR1-216ENST00000477983 SLC4A2P04920 1241 aa18.04■□□□□ 0.48
LMBR1-216ENST00000477983 U3KPZ7 1027 aaPredicted RBP18.01■□□□□ 0.47
LMBR1-216ENST00000477983 SLC4A1APQ9BWU0 796 aaKnown RBP17.8■□□□□ 0.44
LMBR1-216ENST00000477983 SPINK5Q9NQ38 1064 aaPredicted RBP17.65■□□□□ 0.42
LMBR1-216ENST00000477983 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.61■□□□□ 0.41
LMBR1-216ENST00000477983 HNRNPUL2Q1KMD3 747 aaKnown RBP17.61■□□□□ 0.41
LMBR1-216ENST00000477983 CAPN15O75808 1086 aa17.57■□□□□ 0.4
LMBR1-216ENST00000477983 APLP2Q06481 763 aa17.55■□□□□ 0.4
LMBR1-216ENST00000477983 SAMD1Q6SPF0 538 aaPredicted RBP17.52■□□□□ 0.4
LMBR1-216ENST00000477983 MYCNP04198 464 aaPredicted RBP17.51■□□□□ 0.39
LMBR1-216ENST00000477983 DSG3P32926 999 aa17.48■□□□□ 0.39
LMBR1-216ENST00000477983 FOXD4L1Q9NU39 408 aa17.48■□□□□ 0.39
LMBR1-216ENST00000477983 ZNF219Q9P2Y4 722 aaPredicted RBP17.39■□□□□ 0.37
LMBR1-216ENST00000477983 TRHP20396 242 aaPredicted RBP17.36■□□□□ 0.37
LMBR1-216ENST00000477983 ZBTB22O15209 634 aa17.3■□□□□ 0.36
LMBR1-216ENST00000477983 ABCB7O75027 752 aa17.18■□□□□ 0.34
LMBR1-216ENST00000477983 ATF5Q9Y2D1 282 aaPredicted RBP17.08■□□□□ 0.32
LMBR1-216ENST00000477983 POLA2Q14181 598 aa17■□□□□ 0.31
LMBR1-216ENST00000477983 ATXN8OSP0DMR3 200 aa16.97■□□□□ 0.31
LMBR1-216ENST00000477983 POTEHQ6S545 545 aa16.94■□□□□ 0.3
LMBR1-216ENST00000477983 CSRNP3Q8WYN3 585 aa16.78■□□□□ 0.28
LMBR1-216ENST00000477983 ZBTB12Q9Y330 459 aaPredicted RBP16.69■□□□□ 0.26
LMBR1-216ENST00000477983 RBM42Q9BTD8 480 aaKnown RBP16.66■□□□□ 0.26
LMBR1-216ENST00000477983 EHMT2Q96KQ7 1210 aa16.59■□□□□ 0.25
LMBR1-216ENST00000477983 OSCARQ8IYS5 282 aa16.4■□□□□ 0.22
LMBR1-216ENST00000477983 FBLN2P98095 1184 aa16.37■□□□□ 0.21
LMBR1-216ENST00000477983 AKT1S1Q96B36 256 aa16.36■□□□□ 0.21
LMBR1-216ENST00000477983 MKRN4PQ13434 485 aaPredicted RBP16.32■□□□□ 0.2
LMBR1-216ENST00000477983 SPDYE2BA6NHP3 402 aa16.21■□□□□ 0.19
LMBR1-216ENST00000477983 SPDYE6P0CI01 402 aa16.21■□□□□ 0.19
LMBR1-216ENST00000477983 SPDYE2Q495Y8 402 aa16.21■□□□□ 0.19
LMBR1-216ENST00000477983 REM2Q8IYK8 340 aaPredicted RBP16.18■□□□□ 0.18
LMBR1-216ENST00000477983 CHRDL2Q6WN34 429 aa16.16■□□□□ 0.18
LMBR1-216ENST00000477983 ZNF692Q9BU19 519 aaPredicted RBP16.03■□□□□ 0.16
LMBR1-216ENST00000477983 SSUH2Q9Y2M2 353 aa16.03■□□□□ 0.16
LMBR1-216ENST00000477983 PITPNM1O00562 1244 aa15.98■□□□□ 0.15
LMBR1-216ENST00000477983 PIP4P2Q8N4L2 257 aa15.85■□□□□ 0.13
LMBR1-216ENST00000477983 FXR2P51116 673 aaKnown RBP eCLIP15.84■□□□□ 0.13
LMBR1-216ENST00000477983 SPDYE1Q8NFV5 336 aaPredicted RBP15.84■□□□□ 0.13
LMBR1-216ENST00000477983 PABPN1Q86U42 306 aaKnown RBP eCLIP15.79■□□□□ 0.12
LMBR1-216ENST00000477983 CLEC11AQ9Y240 323 aa15.74■□□□□ 0.11
LMBR1-216ENST00000477983 SP7Q8TDD2 431 aaPredicted RBP15.7■□□□□ 0.1
LMBR1-216ENST00000477983 SPDYE4A6NLX3 237 aa15.66■□□□□ 0.1
LMBR1-216ENST00000477983 PRR29P0C7W0 189 aa15.57■□□□□ 0.08
LMBR1-216ENST00000477983 PRKAR2AP13861 404 aaKnown RBP15.56■□□□□ 0.08
LMBR1-216ENST00000477983 HAX1O00165 279 aa15.53■□□□□ 0.08
LMBR1-216ENST00000477983 STAG3Q9UJ98 1225 aa15.47■□□□□ 0.07
LMBR1-216ENST00000477983 CHADLQ6NUI6 762 aa15.43■□□□□ 0.06
LMBR1-216ENST00000477983 PROM2Q8N271 834 aa15.41■□□□□ 0.06
LMBR1-216ENST00000477983 EVX2Q03828 476 aa15.35■□□□□ 0.05
LMBR1-216ENST00000477983 C19orf67A6NJJ6 358 aa15.32■□□□□ 0.04
LMBR1-216ENST00000477983 CREBZFQ9NS37 354 aa15.27■□□□□ 0.04
LMBR1-216ENST00000477983 FARP1Q9Y4F1 1045 aaPredicted RBP15.27■□□□□ 0.04
LMBR1-216ENST00000477983 FKBP8Q14318 412 aa15.14■□□□□ 0.01
LMBR1-216ENST00000477983 CD44P16070 742 aaKnown RBP15.08■□□□□ 0
LMBR1-216ENST00000477983 MNX1P50219 401 aaPredicted RBP15.07■□□□□ 0
LMBR1-216ENST00000477983 GABBR2O75899 941 aa15□□□□□ -0.01
LMBR1-216ENST00000477983 NPM1P06748 294 aaKnown RBP eCLIP14.99□□□□□ -0.01
LMBR1-216ENST00000477983 CLCN6P51797 869 aa14.94□□□□□ -0.02
LMBR1-216ENST00000477983 MIER1Q8N108 512 aa14.91□□□□□ -0.02
LMBR1-216ENST00000477983 ZRANB1Q9UGI0 708 aa14.91□□□□□ -0.02
LMBR1-216ENST00000477983 ZNF579Q8NAF0 562 aaKnown RBP14.9□□□□□ -0.02
LMBR1-216ENST00000477983 PLEKHG5O94827 1062 aa14.86□□□□□ -0.03
LMBR1-216ENST00000477983 PAK3O75914 559 aaPredicted RBP14.84□□□□□ -0.03
LMBR1-216ENST00000477983 PLCD3Q8N3E9 789 aa14.8□□□□□ -0.04
LMBR1-216ENST00000477983 FBXO3Q9UK99 471 aa14.8□□□□□ -0.04
LMBR1-216ENST00000477983 LHX8Q68G74 356 aa14.73□□□□□ -0.05
LMBR1-216ENST00000477983 ZBTB47Q9UFB7 747 aaPredicted RBP14.72□□□□□ -0.05
LMBR1-216ENST00000477983 PHF12Q96QT6 1004 aa14.71□□□□□ -0.05
LMBR1-216ENST00000477983 POTEIP0CG38 1075 aa14.69□□□□□ -0.06
LMBR1-216ENST00000477983 TSPYL2Q9H2G4 693 aaPredicted RBP14.68□□□□□ -0.06
LMBR1-216ENST00000477983 GALR2O43603 387 aaPredicted RBP14.67□□□□□ -0.06
LMBR1-216ENST00000477983 RASEFQ8IZ41 740 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms