Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
CACNA1FO60840 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
CACNA1FO60840 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CACNA1FO60840 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
CACNA1FO60840 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CACNA1FO60840 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CACNA1FO60840 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CACNA1FO60840 SHF-208ENST00000560734 1731 ntTSL 3 BASIC31.65■■■□□ 2.66
CACNA1FO60840 AL449106.1-201ENST00000608517 1980 ntBASIC31.65■■■□□ 2.66
CACNA1FO60840 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.65■■■□□ 2.66
CACNA1FO60840 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC31.64■■■□□ 2.66
CACNA1FO60840 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
CACNA1FO60840 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.64■■■□□ 2.66
CACNA1FO60840 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CACNA1FO60840 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.63■■■□□ 2.65
CACNA1FO60840 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CACNA1FO60840 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CACNA1FO60840 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
CACNA1FO60840 REST-210ENST00000638187 1334 ntTSL 5 BASIC31.61■■■□□ 2.65
CACNA1FO60840 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
CACNA1FO60840 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
CACNA1FO60840 RNF126P1-201ENST00000567452 1320 ntBASIC31.61■■■□□ 2.65
CACNA1FO60840 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CACNA1FO60840 AL359258.2-201ENST00000564063 1566 ntBASIC31.6■■■□□ 2.65
CACNA1FO60840 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
CACNA1FO60840 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
CACNA1FO60840 ABHD17AP5-201ENST00000580133 923 ntBASIC31.59■■■□□ 2.65
CACNA1FO60840 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CACNA1FO60840 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
CACNA1FO60840 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC31.58■■■□□ 2.65
CACNA1FO60840 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC31.58■■■□□ 2.65
CACNA1FO60840 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.65
CACNA1FO60840 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC31.57■■■□□ 2.64
CACNA1FO60840 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.64
CACNA1FO60840 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CACNA1FO60840 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC31.57■■■□□ 2.64
CACNA1FO60840 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CACNA1FO60840 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC31.57■■■□□ 2.64
CACNA1FO60840 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CACNA1FO60840 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC31.56■■■□□ 2.64
CACNA1FO60840 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CACNA1FO60840 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC31.55■■■□□ 2.64
CACNA1FO60840 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CACNA1FO60840 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CACNA1FO60840 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
CACNA1FO60840 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CACNA1FO60840 ECEL1P2-201ENST00000461596 1295 ntBASIC31.54■■■□□ 2.64
CACNA1FO60840 PFN2-211ENST00000489155 636 ntTSL 4 BASIC31.53■■■□□ 2.64
CACNA1FO60840 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
CACNA1FO60840 AL359504.2-201ENST00000605506 1601 ntBASIC31.52■■■□□ 2.64
CACNA1FO60840 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC31.52■■■□□ 2.64
CACNA1FO60840 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
CACNA1FO60840 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC31.51■■■□□ 2.63
CACNA1FO60840 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC31.5■■■□□ 2.63
CACNA1FO60840 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CACNA1FO60840 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC31.49■■■□□ 2.63
CACNA1FO60840 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CACNA1FO60840 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC31.48■■■□□ 2.63
CACNA1FO60840 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
CACNA1FO60840 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CACNA1FO60840 AC007029.1-201ENST00000604183 313 ntBASIC31.48■■■□□ 2.63
CACNA1FO60840 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
CACNA1FO60840 AC093536.1-201ENST00000569153 554 ntBASIC31.47■■■□□ 2.63
CACNA1FO60840 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC31.46■■■□□ 2.63
CACNA1FO60840 HYI-213ENST00000583037 1322 ntTSL 5 BASIC31.46■■■□□ 2.63
CACNA1FO60840 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CACNA1FO60840 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CACNA1FO60840 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC31.45■■■□□ 2.63
CACNA1FO60840 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CACNA1FO60840 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
CACNA1FO60840 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.45■■■□□ 2.62
CACNA1FO60840 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CACNA1FO60840 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CACNA1FO60840 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
CACNA1FO60840 AC142472.1-201ENST00000612013 1741 ntBASIC31.44■■■□□ 2.62
CACNA1FO60840 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC31.44■■■□□ 2.62
CACNA1FO60840 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
CACNA1FO60840 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CACNA1FO60840 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
CACNA1FO60840 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CACNA1FO60840 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CACNA1FO60840 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CACNA1FO60840 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CACNA1FO60840 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC31.43■■■□□ 2.62
CACNA1FO60840 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CACNA1FO60840 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
CACNA1FO60840 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CACNA1FO60840 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC31.42■■■□□ 2.62
CACNA1FO60840 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC31.42■■■□□ 2.62
CACNA1FO60840 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CACNA1FO60840 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CACNA1FO60840 RAP2CP1-202ENST00000605179 643 ntBASIC31.41■■■□□ 2.62
CACNA1FO60840 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
CACNA1FO60840 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CACNA1FO60840 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
CACNA1FO60840 HES4-204ENST00000484667 667 ntTSL 3 BASIC31.39■■■□□ 2.62
CACNA1FO60840 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
CACNA1FO60840 SMPD5-203ENST00000639008 1464 ntBASIC31.39■■■□□ 2.62
CACNA1FO60840 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC31.39■■■□□ 2.62
CACNA1FO60840 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC31.38■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms