Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
XRCC3O43542 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
XRCC3O43542 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
XRCC3O43542 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
XRCC3O43542 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
XRCC3O43542 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.11■□□□□ 0.97
XRCC3O43542 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
XRCC3O43542 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
XRCC3O43542 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
XRCC3O43542 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.1■□□□□ 0.97
XRCC3O43542 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.1■□□□□ 0.97
XRCC3O43542 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
XRCC3O43542 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
XRCC3O43542 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
XRCC3O43542 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
XRCC3O43542 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
XRCC3O43542 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
XRCC3O43542 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
XRCC3O43542 LINC00273-201ENST00000539813 1452 ntBASIC21.09■□□□□ 0.97
XRCC3O43542 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
XRCC3O43542 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
XRCC3O43542 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
XRCC3O43542 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
XRCC3O43542 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
XRCC3O43542 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
XRCC3O43542 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
XRCC3O43542 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
XRCC3O43542 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
XRCC3O43542 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
XRCC3O43542 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
XRCC3O43542 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
XRCC3O43542 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
XRCC3O43542 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
XRCC3O43542 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
XRCC3O43542 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.07■□□□□ 0.96
XRCC3O43542 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
XRCC3O43542 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.07■□□□□ 0.96
XRCC3O43542 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
XRCC3O43542 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
XRCC3O43542 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
XRCC3O43542 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.06■□□□□ 0.96
XRCC3O43542 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.06■□□□□ 0.96
XRCC3O43542 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
XRCC3O43542 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
XRCC3O43542 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
XRCC3O43542 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
XRCC3O43542 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.05■□□□□ 0.96
XRCC3O43542 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
XRCC3O43542 MIR762-201ENST00000390236 83 ntBASIC21.04■□□□□ 0.96
XRCC3O43542 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
XRCC3O43542 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
XRCC3O43542 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.03■□□□□ 0.96
XRCC3O43542 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.03■□□□□ 0.96
XRCC3O43542 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.03■□□□□ 0.96
XRCC3O43542 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
XRCC3O43542 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
XRCC3O43542 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
XRCC3O43542 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
XRCC3O43542 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
XRCC3O43542 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
XRCC3O43542 AC142381.3-201ENST00000568208 1670 ntBASIC21.02■□□□□ 0.96
XRCC3O43542 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
XRCC3O43542 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
XRCC3O43542 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
XRCC3O43542 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
XRCC3O43542 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
XRCC3O43542 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
XRCC3O43542 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.02■□□□□ 0.96
XRCC3O43542 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
XRCC3O43542 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
XRCC3O43542 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
XRCC3O43542 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
XRCC3O43542 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
XRCC3O43542 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
XRCC3O43542 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
XRCC3O43542 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.01■□□□□ 0.95
XRCC3O43542 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
XRCC3O43542 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
XRCC3O43542 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
XRCC3O43542 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
XRCC3O43542 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
XRCC3O43542 AC010501.1-201ENST00000606270 1962 ntBASIC21■□□□□ 0.95
XRCC3O43542 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
XRCC3O43542 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
XRCC3O43542 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
XRCC3O43542 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
XRCC3O43542 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
XRCC3O43542 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.99■□□□□ 0.95
XRCC3O43542 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC20.99■□□□□ 0.95
XRCC3O43542 CHML-205ENST00000638160 705 ntTSL 3 BASIC20.99■□□□□ 0.95
XRCC3O43542 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
XRCC3O43542 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
XRCC3O43542 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
XRCC3O43542 AC108673.1-201ENST00000510422 1159 ntBASIC20.98■□□□□ 0.95
XRCC3O43542 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.98■□□□□ 0.95
XRCC3O43542 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.97■□□□□ 0.95
XRCC3O43542 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
XRCC3O43542 AC136428.2-201ENST00000563187 214 ntBASIC20.97■□□□□ 0.95
XRCC3O43542 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
XRCC3O43542 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms