Protein–RNA interactions for Protein: O15266

SHOX, Short stature homeobox protein, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOXO15266 AC127502.1-201ENST00000399971 1502 ntBASIC20.88■□□□□ 0.93
SHOXO15266 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHOXO15266 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.87■□□□□ 0.93
SHOXO15266 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHOXO15266 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOXO15266 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOXO15266 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHOXO15266 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOXO15266 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOXO15266 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHOXO15266 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SHOXO15266 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHOXO15266 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.84■□□□□ 0.93
SHOXO15266 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
SHOXO15266 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHOXO15266 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHOXO15266 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHOXO15266 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHOXO15266 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHOXO15266 AP004833.2-201ENST00000532228 1454 ntBASIC20.83■□□□□ 0.93
SHOXO15266 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHOXO15266 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHOXO15266 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SHOXO15266 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SHOXO15266 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SHOXO15266 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SHOXO15266 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHOXO15266 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHOXO15266 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHOXO15266 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
SHOXO15266 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHOXO15266 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.81■□□□□ 0.92
SHOXO15266 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.81■□□□□ 0.92
SHOXO15266 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.81■□□□□ 0.92
SHOXO15266 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHOXO15266 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHOXO15266 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.81■□□□□ 0.92
SHOXO15266 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC20.81■□□□□ 0.92
SHOXO15266 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHOXO15266 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.8■□□□□ 0.92
SHOXO15266 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOXO15266 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHOXO15266 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SHOXO15266 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOXO15266 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.8■□□□□ 0.92
SHOXO15266 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHOXO15266 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOXO15266 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOXO15266 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHOXO15266 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.8■□□□□ 0.92
SHOXO15266 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHOXO15266 AC145676.1-201ENST00000514988 2004 ntBASIC20.79■□□□□ 0.92
SHOXO15266 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.79■□□□□ 0.92
SHOXO15266 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.79■□□□□ 0.92
SHOXO15266 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHOXO15266 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHOXO15266 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHOXO15266 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHOXO15266 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.77■□□□□ 0.92
SHOXO15266 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
SHOXO15266 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.77■□□□□ 0.92
SHOXO15266 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHOXO15266 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SHOXO15266 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SHOXO15266 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHOXO15266 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.76■□□□□ 0.91
SHOXO15266 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHOXO15266 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHOXO15266 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHOXO15266 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SHOXO15266 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHOXO15266 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
SHOXO15266 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.76■□□□□ 0.91
SHOXO15266 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHOXO15266 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHOXO15266 AC068473.5-201ENST00000616428 2072 ntBASIC20.75■□□□□ 0.91
SHOXO15266 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.75■□□□□ 0.91
SHOXO15266 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.75■□□□□ 0.91
SHOXO15266 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
SHOXO15266 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHOXO15266 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SHOXO15266 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHOXO15266 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHOXO15266 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHOXO15266 AC108673.1-201ENST00000510422 1159 ntBASIC20.74■□□□□ 0.91
SHOXO15266 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHOXO15266 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHOXO15266 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHOXO15266 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms