Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
SLC28A1O00337 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
SLC28A1O00337 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
SLC28A1O00337 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SLC28A1O00337 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.72■■□□□ 1.39
SLC28A1O00337 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SLC28A1O00337 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SLC28A1O00337 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
SLC28A1O00337 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SLC28A1O00337 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SLC28A1O00337 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.39
SLC28A1O00337 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SLC28A1O00337 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
SLC28A1O00337 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SLC28A1O00337 DUX4L13-201ENST00000554103 1267 ntBASIC23.7■■□□□ 1.38
SLC28A1O00337 DUX4L15-201ENST00000611059 1267 ntBASIC23.7■■□□□ 1.38
SLC28A1O00337 DUX4L23-201ENST00000615195 1269 ntBASIC23.7■■□□□ 1.38
SLC28A1O00337 DUX4L24-201ENST00000617576 1269 ntBASIC23.7■■□□□ 1.38
SLC28A1O00337 DUX4L22-201ENST00000618238 1269 ntBASIC23.7■■□□□ 1.38
SLC28A1O00337 DUX4L20-201ENST00000619712 1269 ntBASIC23.7■■□□□ 1.38
SLC28A1O00337 DUX4L21-201ENST00000622058 1269 ntBASIC23.7■■□□□ 1.38
SLC28A1O00337 DUX4L10-201ENST00000622460 1267 ntBASIC23.7■■□□□ 1.38
SLC28A1O00337 DUX4L25-201ENST00000624915 1269 ntBASIC23.7■■□□□ 1.38
SLC28A1O00337 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SLC28A1O00337 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
SLC28A1O00337 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SLC28A1O00337 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SLC28A1O00337 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.69■■□□□ 1.38
SLC28A1O00337 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
SLC28A1O00337 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
SLC28A1O00337 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.69■■□□□ 1.38
SLC28A1O00337 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.68■■□□□ 1.38
SLC28A1O00337 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.68■■□□□ 1.38
SLC28A1O00337 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
SLC28A1O00337 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
SLC28A1O00337 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SLC28A1O00337 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SLC28A1O00337 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.68■■□□□ 1.38
SLC28A1O00337 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SLC28A1O00337 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SLC28A1O00337 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.67■■□□□ 1.38
SLC28A1O00337 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SLC28A1O00337 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SLC28A1O00337 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SLC28A1O00337 AC008813.1-201ENST00000536597 885 ntBASIC23.67■■□□□ 1.38
SLC28A1O00337 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.67■■□□□ 1.38
SLC28A1O00337 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.67■■□□□ 1.38
SLC28A1O00337 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SLC28A1O00337 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.67■■□□□ 1.38
SLC28A1O00337 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
SLC28A1O00337 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.66■■□□□ 1.38
SLC28A1O00337 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SLC28A1O00337 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SLC28A1O00337 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SLC28A1O00337 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SLC28A1O00337 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.65■■□□□ 1.38
SLC28A1O00337 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SLC28A1O00337 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.65■■□□□ 1.38
SLC28A1O00337 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SLC28A1O00337 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SLC28A1O00337 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
SLC28A1O00337 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SLC28A1O00337 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SLC28A1O00337 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SLC28A1O00337 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SLC28A1O00337 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SLC28A1O00337 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.64■■□□□ 1.38
SLC28A1O00337 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SLC28A1O00337 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SLC28A1O00337 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
SLC28A1O00337 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SLC28A1O00337 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SLC28A1O00337 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SLC28A1O00337 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.63■■□□□ 1.37
SLC28A1O00337 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SLC28A1O00337 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SLC28A1O00337 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.63■■□□□ 1.37
SLC28A1O00337 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SLC28A1O00337 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.63■■□□□ 1.37
SLC28A1O00337 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
SLC28A1O00337 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.63■■□□□ 1.37
SLC28A1O00337 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
SLC28A1O00337 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SLC28A1O00337 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
SLC28A1O00337 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.62■■□□□ 1.37
SLC28A1O00337 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.62■■□□□ 1.37
SLC28A1O00337 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SLC28A1O00337 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.62■■□□□ 1.37
SLC28A1O00337 DUX4L11-201ENST00000611504 1267 ntBASIC23.62■■□□□ 1.37
SLC28A1O00337 DUX4L12-201ENST00000614593 1267 ntBASIC23.62■■□□□ 1.37
SLC28A1O00337 DUX4L14-201ENST00000621227 1267 ntBASIC23.62■■□□□ 1.37
SLC28A1O00337 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.62■■□□□ 1.37
SLC28A1O00337 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
SLC28A1O00337 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SLC28A1O00337 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SLC28A1O00337 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
SLC28A1O00337 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.61■■□□□ 1.37
SLC28A1O00337 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SLC28A1O00337 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.61■■□□□ 1.37
SLC28A1O00337 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms