Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21.42■■□□□ 1.02
NKX2-3Q8TAU0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.42■■□□□ 1.02
NKX2-3Q8TAU0 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.42■■□□□ 1.02
NKX2-3Q8TAU0 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NKX2-3Q8TAU0 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
NKX2-3Q8TAU0 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NKX2-3Q8TAU0 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
NKX2-3Q8TAU0 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 AC093010.1-201ENST00000473625 1624 ntBASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 KRT89P-201ENST00000620027 1478 ntBASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 AL353692.3-201ENST00000407031 1396 ntBASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 AC092183.1-201ENST00000469884 875 ntBASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 GPR32P1-201ENST00000601788 811 ntBASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 AC064862.7-201ENST00000604520 867 ntBASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.41■■□□□ 1.02
NKX2-3Q8TAU0 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 FAM220CP-201ENST00000395253 831 ntBASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 RN7SL606P-201ENST00000472779 293 ntBASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 AC009065.1-201ENST00000564055 1225 ntBASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 VPS51-217ENST00000639871 243 ntTSL 5 BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX2-3Q8TAU0 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.02
NKX2-3Q8TAU0 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 MIR574-201ENST00000385209 96 ntBASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 AP005901.3-202ENST00000581653 237 ntBASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.39■■□□□ 1.01
NKX2-3Q8TAU0 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms