Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 C11orf24-208ENST00000532969 485 ntTSL 217.44■□□□□ 0.389e-7■□□□□ 10
DDX55Q8NHQ9 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.88■□□□□ 0.299e-7■□□□□ 10
DDX55Q8NHQ9 CD276-206ENST00000559073 1844 ntTSL 1 (best)16.57■□□□□ 0.241e-6■□□□□ 10
DDX55Q8NHQ9 CD276-207ENST00000559465 1620 ntTSL 1 (best)16.49■□□□□ 0.231e-6■□□□□ 10
DDX55Q8NHQ9 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.162e-7■□□□□ 10
DDX55Q8NHQ9 MGAT4B-219ENST00000522293 759 ntTSL 315.73■□□□□ 0.119e-7■□□□□ 10
DDX55Q8NHQ9 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC15.55■□□□□ 0.089e-7■□□□□ 10
DDX55Q8NHQ9 CAPN1-214ENST00000528165 2828 ntTSL 215.39■□□□□ 0.052e-9■□□□□ 10
DDX55Q8NHQ9 ENGASE-201ENST00000300682 4626 ntTSL 515.15■□□□□ 0.029e-7■□□□□ 10
DDX55Q8NHQ9 CKB-212ENST00000555366 419 ntTSL 215.14■□□□□ 0.019e-7■□□□□ 10
DDX55Q8NHQ9 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.049e-7■□□□□ 10
DDX55Q8NHQ9 AL136115.2-201ENST00000602889 587 ntTSL 5 BASIC14.65□□□□□ -0.069e-7■□□□□ 10
DDX55Q8NHQ9 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.19e-7■□□□□ 10
DDX55Q8NHQ9 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.111e-6■□□□□ 10
DDX55Q8NHQ9 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.242e-9■□□□□ 10
DDX55Q8NHQ9 NPC1L1-204ENST00000546276 4826 ntTSL 1 (best) BASIC13.38□□□□□ -0.279e-7■□□□□ 10
DDX55Q8NHQ9 CAPN1-208ENST00000527323 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.292e-9■□□□□ 10
DDX55Q8NHQ9 ABCD1-201ENST00000218104 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.299e-7■□□□□ 10
DDX55Q8NHQ9 NPC1L1-201ENST00000289547 5048 ntTSL 1 (best) BASIC12.47□□□□□ -0.419e-7■□□□□ 10
DDX55Q8NHQ9 PPP2R1A-208ENST00000473820 646 ntTSL 212.22□□□□□ -0.459e-7■□□□□ 10
DDX55Q8NHQ9 NFE2L1-212ENST00000581319 481 ntTSL 311.9□□□□□ -0.59e-7■□□□□ 10
DDX55Q8NHQ9 PAQR7-201ENST00000374296 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.63e-6■□□□□ 10
DDX55Q8NHQ9 MGAT4B-207ENST00000518980 983 ntTSL 59.19□□□□□ -0.949e-7■□□□□ 10
DDX55Q8NHQ9 PTP4A2-218ENST00000602725 3353 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.989e-7■□□□□ 10
DDX55Q8NHQ9 UBE2B-202ENST00000499038 682 ntTSL 35.66□□□□□ -1.59e-7■□□□□ 10
DDX55Q8NHQ9 UBE2B-203ENST00000503080 657 ntTSL 25.64□□□□□ -1.519e-7■□□□□ 10
DDX55Q8NHQ9 RBX1-202ENST00000467617 1871 ntTSL 216.6■□□□□ 0.251e-7■□□□□ 10
DDX55Q8NHQ9 RNA5SP74-201ENST00000363538 109 ntBASIC10.6□□□□□ -0.717e-36■□□□□ 10
DDX55Q8NHQ9 FKBP1A-203ENST00000381724 976 ntTSL 2 BASIC9.8□□□□□ -0.845e-9■□□□□ 10
DDX55Q8NHQ9 FKBP1A-206ENST00000460490 694 ntTSL 27.97□□□□□ -1.135e-9■□□□□ 10
DDX55Q8NHQ9 MRPL44-201ENST00000258383 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.132e-7■□□□□ 10
DDX55Q8NHQ9 TPM4-213ENST00000591226 2672 nt12.45□□□□□ -0.425e-17■□□□□ 10
DDX55Q8NHQ9 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC29.7■■■□□ 2.351e-15■□□□□ 10
DDX55Q8NHQ9 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC24.26■■□□□ 1.471e-15■□□□□ 10
DDX55Q8NHQ9 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.91■■□□□ 1.11e-15■□□□□ 10
DDX55Q8NHQ9 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC26.37■■□□□ 1.815e-8■□□□□ 10
DDX55Q8NHQ9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.68■■□□□ 1.065e-8■□□□□ 10
DDX55Q8NHQ9 AP2M1-212ENST00000461733 1470 ntTSL 218.14■□□□□ 0.499e-8■□□□□ 10
DDX55Q8NHQ9 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.29e-8■□□□□ 10
DDX55Q8NHQ9 TMEM59-201ENST00000234831 6691 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.435e-14■□□□□ 10
DDX55Q8NHQ9 TMEM59-204ENST00000371344 2473 ntTSL 2 BASIC8.22□□□□□ -1.095e-14■□□□□ 10
DDX55Q8NHQ9 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.87□□□□□ -1.795e-14■□□□□ 10
DDX55Q8NHQ9 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.651e-7■□□□□ 10
DDX55Q8NHQ9 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.55■□□□□ 0.561e-7■□□□□ 10
DDX55Q8NHQ9 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.531e-7■□□□□ 10
DDX55Q8NHQ9 GRN-205ENST00000586443 1557 ntTSL 321.41■■□□□ 1.021e-9■□□□□ 10
DDX55Q8NHQ9 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.76■□□□□ 0.591e-9■□□□□ 10
DDX55Q8NHQ9 GRN-204ENST00000586242 665 ntTSL 318.26■□□□□ 0.511e-9■□□□□ 10
DDX55Q8NHQ9 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.321e-9■□□□□ 10
DDX55Q8NHQ9 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.98■□□□□ 0.634e-22■□□□□ 10
DDX55Q8NHQ9 DEK-204ENST00000505224 1372 ntTSL 215.87■□□□□ 0.134e-22■□□□□ 10
DDX55Q8NHQ9 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.064e-22■□□□□ 10
DDX55Q8NHQ9 COQ8A-206ENST00000479852 1938 ntTSL 1 (best)23.92■■□□□ 1.427e-13■□□□□ 10
DDX55Q8NHQ9 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.467e-13■□□□□ 10
DDX55Q8NHQ9 COQ8A-207ENST00000485462 2141 ntTSL 1 (best)17.78■□□□□ 0.447e-13■□□□□ 10
DDX55Q8NHQ9 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.22■□□□□ 0.357e-13■□□□□ 10
DDX55Q8NHQ9 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.177e-13■□□□□ 10
DDX55Q8NHQ9 COQ8A-205ENST00000478406 3612 ntTSL 215.67■□□□□ 0.17e-13■□□□□ 10
DDX55Q8NHQ9 UXT-205ENST00000485641 627 ntTSL 320.23■□□□□ 0.832e-13■□□□□ 10
DDX55Q8NHQ9 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.253e-20■□□□□ 10
DDX55Q8NHQ9 DDB1-203ENST00000451943 1224 ntTSL 29.46□□□□□ -0.93e-20■□□□□ 10
DDX55Q8NHQ9 ARL2-202ENST00000524585 1228 ntTSL 216.43■□□□□ 0.228e-7■□□□□ 10
DDX55Q8NHQ9 SLC4A2-208ENST00000469467 442 ntTSL 212.67□□□□□ -0.388e-8■□□□□ 10
DDX55Q8NHQ9 GDPD5-212ENST00000531759 2633 ntTSL 512.92□□□□□ -0.343e-9■□□□□ 10
DDX55Q8NHQ9 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.982e-7■□□□□ 10
DDX55Q8NHQ9 CKB-207ENST00000554282 735 ntTSL 225.26■■□□□ 1.632e-7■□□□□ 10
DDX55Q8NHQ9 CKB-204ENST00000553652 1239 ntTSL 520.81■□□□□ 0.922e-7■□□□□ 10
DDX55Q8NHQ9 CKB-202ENST00000553528 1170 ntTSL 220.56■□□□□ 0.882e-7■□□□□ 10
DDX55Q8NHQ9 SLC5A6-213ENST00000461757 2307 ntTSL 219.1■□□□□ 0.656e-9■□□□□ 10
DDX55Q8NHQ9 CKB-210ENST00000554989 625 ntTSL 219.05■□□□□ 0.642e-7■□□□□ 10
DDX55Q8NHQ9 SLC5A6-217ENST00000488743 3174 ntTSL 212.64□□□□□ -0.396e-9■□□□□ 10
DDX55Q8NHQ9 SLC5A6-201ENST00000310574 3231 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.426e-9■□□□□ 10
DDX55Q8NHQ9 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.152e-31■□□□□ 10
DDX55Q8NHQ9 EML4-204ENST00000406175 4622 ntTSL 1 (best)6.64□□□□□ -1.352e-31■□□□□ 10
DDX55Q8NHQ9 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.712e-6■□□□□ 10
DDX55Q8NHQ9 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC25.61■■□□□ 1.692e-6■□□□□ 10
DDX55Q8NHQ9 HSF1-214ENST00000614796 1724 ntTSL 522.14■■□□□ 1.132e-6■□□□□ 10
DDX55Q8NHQ9 HSF1-202ENST00000527328 2336 ntTSL 218.51■□□□□ 0.552e-6■□□□□ 10
DDX55Q8NHQ9 HSF1-210ENST00000532338 3451 ntTSL 213.62□□□□□ -0.232e-6■□□□□ 10
DDX55Q8NHQ9 CLU-209ENST00000522098 850 ntTSL 212.69□□□□□ -0.385e-10■□□□□ 10
DDX55Q8NHQ9 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.686e-7■□□□□ 10
DDX55Q8NHQ9 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.326e-7■□□□□ 10
DDX55Q8NHQ9 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.086e-7■□□□□ 10
DDX55Q8NHQ9 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.74e-7■□□□□ 10
DDX55Q8NHQ9 HNRNPL-212ENST00000601449 1918 ntTSL 519.1■□□□□ 0.654e-7■□□□□ 10
DDX55Q8NHQ9 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.024e-7■□□□□ 10
DDX55Q8NHQ9 HNRNPL-203ENST00000595164 2404 ntTSL 214.11□□□□□ -0.154e-7■□□□□ 10
DDX55Q8NHQ9 HNRNPL-204ENST00000595443 2122 ntTSL 212.55□□□□□ -0.44e-7■□□□□ 10
DDX55Q8NHQ9 HNRNPL-206ENST00000597731 3094 ntTSL 211.8□□□□□ -0.524e-7■□□□□ 10
DDX55Q8NHQ9 HNRNPL-202ENST00000388749 1952 ntTSL 511.32□□□□□ -0.64e-7■□□□□ 10
DDX55Q8NHQ9 AC008982.1-202ENST00000602021 342 ntTSL 59.9□□□□□ -0.824e-7■□□□□ 10
DDX55Q8NHQ9 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.57e-11■□□□□ 10
DDX55Q8NHQ9 ARHGEF40-208ENST00000557498 794 ntTSL 216.71■□□□□ 0.277e-11■□□□□ 10
DDX55Q8NHQ9 ARHGEF40-202ENST00000553709 5204 ntTSL 1 (best)16.7■□□□□ 0.267e-11■□□□□ 10
DDX55Q8NHQ9 ARHGEF40-203ENST00000554514 2928 ntTSL 1 (best)16.48■□□□□ 0.237e-11■□□□□ 10
DDX55Q8NHQ9 ARHGEF40-207ENST00000556399 4902 ntTSL 1 (best)16.21■□□□□ 0.197e-11■□□□□ 10
DDX55Q8NHQ9 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.642e-21■□□□□ 10
DDX55Q8NHQ9 AZGP1-204ENST00000477251 787 ntTSL 218.63■□□□□ 0.573e-11■□□□□ 10
DDX55Q8NHQ9 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.552e-21■□□□□ 10
DDX55Q8NHQ9 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.532e-21■□□□□ 10
Retrieved 100 of 15,504 protein–RNA pairs in 109 ms