Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
KRT39Q6A163 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
KRT39Q6A163 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
KRT39Q6A163 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.58■□□□□ 0.72
KRT39Q6A163 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.58■□□□□ 0.72
KRT39Q6A163 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.57■□□□□ 0.72
KRT39Q6A163 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
KRT39Q6A163 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
KRT39Q6A163 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.57■□□□□ 0.72
KRT39Q6A163 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
KRT39Q6A163 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
KRT39Q6A163 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
KRT39Q6A163 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.57■□□□□ 0.72
KRT39Q6A163 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
KRT39Q6A163 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.57■□□□□ 0.72
KRT39Q6A163 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
KRT39Q6A163 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.57■□□□□ 0.72
KRT39Q6A163 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.57■□□□□ 0.72
KRT39Q6A163 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.57■□□□□ 0.72
KRT39Q6A163 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.57■□□□□ 0.72
KRT39Q6A163 AL671277.2-201ENST00000458060 996 ntBASIC19.57■□□□□ 0.72
KRT39Q6A163 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.57■□□□□ 0.72
KRT39Q6A163 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.57■□□□□ 0.72
KRT39Q6A163 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.57■□□□□ 0.72
KRT39Q6A163 AC083849.1-201ENST00000615227 514 ntBASIC19.57■□□□□ 0.72
KRT39Q6A163 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.57■□□□□ 0.72
KRT39Q6A163 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.57■□□□□ 0.72
KRT39Q6A163 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
KRT39Q6A163 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
KRT39Q6A163 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.57■□□□□ 0.72
KRT39Q6A163 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
KRT39Q6A163 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
KRT39Q6A163 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.57■□□□□ 0.72
KRT39Q6A163 NOC2LP2-201ENST00000407594 1944 ntBASIC19.57■□□□□ 0.72
KRT39Q6A163 BCL2-203ENST00000589955 5011 ntBASIC19.57■□□□□ 0.72
KRT39Q6A163 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
KRT39Q6A163 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.56■□□□□ 0.72
KRT39Q6A163 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.56■□□□□ 0.72
KRT39Q6A163 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.56■□□□□ 0.72
KRT39Q6A163 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.56■□□□□ 0.72
KRT39Q6A163 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.56■□□□□ 0.72
KRT39Q6A163 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.56■□□□□ 0.72
KRT39Q6A163 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
KRT39Q6A163 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.56■□□□□ 0.72
KRT39Q6A163 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.56■□□□□ 0.72
KRT39Q6A163 SLC25A6P5-201ENST00000435663 894 ntBASIC19.56■□□□□ 0.72
KRT39Q6A163 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.56■□□□□ 0.72
KRT39Q6A163 VENTXP5-201ENST00000523979 775 ntBASIC19.56■□□□□ 0.72
KRT39Q6A163 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.56■□□□□ 0.72
KRT39Q6A163 AL049597.2-201ENST00000565575 961 ntBASIC19.56■□□□□ 0.72
KRT39Q6A163 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.56■□□□□ 0.72
KRT39Q6A163 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.56■□□□□ 0.72
KRT39Q6A163 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
KRT39Q6A163 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
KRT39Q6A163 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
KRT39Q6A163 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
KRT39Q6A163 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
KRT39Q6A163 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
KRT39Q6A163 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.55■□□□□ 0.72
KRT39Q6A163 AC008764.6-201ENST00000595909 2069 ntBASIC19.55■□□□□ 0.72
KRT39Q6A163 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
KRT39Q6A163 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
KRT39Q6A163 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
KRT39Q6A163 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
KRT39Q6A163 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
KRT39Q6A163 SPDYE13P-201ENST00000445314 798 ntBASIC19.55■□□□□ 0.72
KRT39Q6A163 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
KRT39Q6A163 AP003733.1-201ENST00000491725 852 ntBASIC19.55■□□□□ 0.72
KRT39Q6A163 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
KRT39Q6A163 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms