Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 RNF152P1-201ENST00000397754 604 ntBASIC15.07■□□□□ 0
PDLIM3Q53GG5 AC117947.1-201ENST00000427448 529 ntBASIC15.07■□□□□ 0
PDLIM3Q53GG5 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 AC116562.2-201ENST00000507042 360 ntBASIC15.07■□□□□ 0
PDLIM3Q53GG5 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 AC004264.1-201ENST00000608354 794 ntBASIC15.07■□□□□ 0
PDLIM3Q53GG5 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 AL121956.5-201ENST00000625261 221 ntBASIC15.07■□□□□ 0
PDLIM3Q53GG5 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 NBPF21P-201ENST00000425093 1451 ntBASIC15.07■□□□□ 0
PDLIM3Q53GG5 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.07■□□□□ 0
PDLIM3Q53GG5 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PDLIM3Q53GG5 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC15.07■□□□□ 0
PDLIM3Q53GG5 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 FDX1P1-201ENST00000449115 551 ntBASIC15.06■□□□□ 0
PDLIM3Q53GG5 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 AC092647.4-201ENST00000457211 535 ntBASIC15.06■□□□□ 0
PDLIM3Q53GG5 ECEL1P2-202ENST00000465689 757 ntBASIC15.06■□□□□ 0
PDLIM3Q53GG5 AC091390.4-202ENST00000476426 537 ntBASIC15.06■□□□□ 0
PDLIM3Q53GG5 F2R-202ENST00000505600 442 ntTSL 2 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 KRT8P32-201ENST00000512863 1461 ntBASIC15.06■□□□□ 0
PDLIM3Q53GG5 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.06■□□□□ 0
PDLIM3Q53GG5 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PDLIM3Q53GG5 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PDLIM3Q53GG5 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.05■□□□□ 0
PDLIM3Q53GG5 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
PDLIM3Q53GG5 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ 0
PDLIM3Q53GG5 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PDLIM3Q53GG5 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
PDLIM3Q53GG5 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PDLIM3Q53GG5 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.05■□□□□ -0
PDLIM3Q53GG5 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
PDLIM3Q53GG5 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ -0
PDLIM3Q53GG5 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PDLIM3Q53GG5 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PDLIM3Q53GG5 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.05■□□□□ -0
PDLIM3Q53GG5 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC15.05■□□□□ -0
PDLIM3Q53GG5 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC15.05■□□□□ -0
PDLIM3Q53GG5 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
PDLIM3Q53GG5 FAM86EP-206ENST00000510506 987 ntBASIC15.05■□□□□ -0
PDLIM3Q53GG5 GPX4-207ENST00000589115 812 ntTSL 2 BASIC15.05■□□□□ -0
PDLIM3Q53GG5 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.05■□□□□ -0
PDLIM3Q53GG5 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms