Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 AC006557.2-201ENST00000592985 1240 ntBASIC19.1■□□□□ 0.65
CHD9Q3L8U1 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 AJ011932.1-201ENST00000621707 465 ntBASIC19.1■□□□□ 0.65
CHD9Q3L8U1 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CHD9Q3L8U1 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.09■□□□□ 0.65
CHD9Q3L8U1 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHD9Q3L8U1 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
CHD9Q3L8U1 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CHD9Q3L8U1 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
CHD9Q3L8U1 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.08■□□□□ 0.65
CHD9Q3L8U1 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CHD9Q3L8U1 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.08■□□□□ 0.65
CHD9Q3L8U1 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHD9Q3L8U1 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
CHD9Q3L8U1 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CHD9Q3L8U1 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.08■□□□□ 0.64
CHD9Q3L8U1 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.08■□□□□ 0.64
CHD9Q3L8U1 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CHD9Q3L8U1 OR7E47P-204ENST00000575924 449 ntBASIC19.08■□□□□ 0.64
CHD9Q3L8U1 AL589182.2-201ENST00000619332 1049 ntBASIC19.08■□□□□ 0.64
CHD9Q3L8U1 AC092902.6-201ENST00000641783 218 ntBASIC19.08■□□□□ 0.64
CHD9Q3L8U1 AC093484.2-201ENST00000580996 2166 ntBASIC19.08■□□□□ 0.64
CHD9Q3L8U1 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHD9Q3L8U1 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHD9Q3L8U1 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.08■□□□□ 0.64
CHD9Q3L8U1 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.08■□□□□ 0.64
CHD9Q3L8U1 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHD9Q3L8U1 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHD9Q3L8U1 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 GAPDHP21-201ENST00000450301 1010 ntBASIC19.07■□□□□ 0.64
CHD9Q3L8U1 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 AC008687.5-201ENST00000593746 558 ntBASIC19.07■□□□□ 0.64
CHD9Q3L8U1 AL513210.1-201ENST00000629608 234 ntBASIC19.07■□□□□ 0.64
CHD9Q3L8U1 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 AC022145.2-201ENST00000598203 171 ntBASIC19.07■□□□□ 0.64
CHD9Q3L8U1 AL390955.2-201ENST00000603032 514 ntBASIC19.07■□□□□ 0.64
CHD9Q3L8U1 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 ELK2BP-201ENST00000415014 1224 ntBASIC19.07■□□□□ 0.64
CHD9Q3L8U1 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.07■□□□□ 0.64
CHD9Q3L8U1 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms