Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 RCC2P3-201ENST00000418112 1537 ntBASIC19.41■□□□□ 0.7
VCPP55072 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
VCPP55072 AL162741.1-201ENST00000565563 1558 ntBASIC19.4■□□□□ 0.7
VCPP55072 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
VCPP55072 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VCPP55072 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
VCPP55072 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.4■□□□□ 0.7
VCPP55072 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.4■□□□□ 0.7
VCPP55072 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.4■□□□□ 0.7
VCPP55072 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 SLC25A1P1-201ENST00000528351 927 ntBASIC19.4■□□□□ 0.7
VCPP55072 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.4■□□□□ 0.7
VCPP55072 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.4■□□□□ 0.7
VCPP55072 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.4■□□□□ 0.7
VCPP55072 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.4■□□□□ 0.7
VCPP55072 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.4■□□□□ 0.7
VCPP55072 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.4■□□□□ 0.7
VCPP55072 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.4■□□□□ 0.7
VCPP55072 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.4■□□□□ 0.7
VCPP55072 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.4■□□□□ 0.7
VCPP55072 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VCPP55072 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.4■□□□□ 0.7
VCPP55072 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCPP55072 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VCPP55072 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
VCPP55072 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
VCPP55072 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VCPP55072 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.39■□□□□ 0.69
VCPP55072 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCPP55072 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.39■□□□□ 0.69
VCPP55072 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.39■□□□□ 0.69
VCPP55072 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.39■□□□□ 0.69
VCPP55072 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.39■□□□□ 0.69
VCPP55072 DRAXINP1-201ENST00000437611 948 ntBASIC19.39■□□□□ 0.69
VCPP55072 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VCPP55072 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.39■□□□□ 0.69
VCPP55072 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.39■□□□□ 0.69
VCPP55072 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.39■□□□□ 0.69
VCPP55072 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.39■□□□□ 0.69
VCPP55072 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.39■□□□□ 0.69
VCPP55072 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCPP55072 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
VCPP55072 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VCPP55072 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCPP55072 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
VCPP55072 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCPP55072 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.39■□□□□ 0.69
VCPP55072 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.39■□□□□ 0.69
VCPP55072 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCPP55072 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCPP55072 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.39■□□□□ 0.69
VCPP55072 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VCPP55072 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
VCPP55072 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCPP55072 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VCPP55072 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
VCPP55072 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
VCPP55072 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
VCPP55072 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.38■□□□□ 0.69
VCPP55072 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
VCPP55072 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 IL9RP2-201ENST00000423948 1312 ntBASIC19.38■□□□□ 0.69
VCPP55072 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.38■□□□□ 0.69
VCPP55072 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 TOB2P1-201ENST00000469761 992 ntBASIC19.38■□□□□ 0.69
VCPP55072 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.38■□□□□ 0.69
VCPP55072 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.38■□□□□ 0.69
VCPP55072 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.38■□□□□ 0.69
VCPP55072 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VCPP55072 AC012615.1-201ENST00000565797 1299 ntBASIC19.38■□□□□ 0.69
VCPP55072 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.38■□□□□ 0.69
VCPP55072 AL499627.1-201ENST00000569373 2188 ntBASIC19.38■□□□□ 0.69
VCPP55072 MIR3180-5-201ENST00000583743 153 ntBASIC19.38■□□□□ 0.69
VCPP55072 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
VCPP55072 AC024243.1-201ENST00000609234 778 ntBASIC19.38■□□□□ 0.69
VCPP55072 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms