Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NEK3P51956 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
NEK3P51956 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.7■□□□□ 0.58
NEK3P51956 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.69■□□□□ 0.58
NEK3P51956 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
NEK3P51956 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.69■□□□□ 0.58
NEK3P51956 HBZP1-201ENST00000354915 429 ntBASIC18.69■□□□□ 0.58
NEK3P51956 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.69■□□□□ 0.58
NEK3P51956 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
NEK3P51956 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.69■□□□□ 0.58
NEK3P51956 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.69■□□□□ 0.58
NEK3P51956 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.69■□□□□ 0.58
NEK3P51956 AL157888.1-201ENST00000631930 593 ntBASIC18.69■□□□□ 0.58
NEK3P51956 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.69■□□□□ 0.58
NEK3P51956 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
NEK3P51956 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
NEK3P51956 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
NEK3P51956 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NEK3P51956 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
NEK3P51956 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.68■□□□□ 0.58
NEK3P51956 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NEK3P51956 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.68■□□□□ 0.58
NEK3P51956 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.68■□□□□ 0.58
NEK3P51956 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.68■□□□□ 0.58
NEK3P51956 AC104390.1-201ENST00000555663 520 ntBASIC18.68■□□□□ 0.58
NEK3P51956 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.68■□□□□ 0.58
NEK3P51956 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
NEK3P51956 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.68■□□□□ 0.58
NEK3P51956 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.68■□□□□ 0.58
NEK3P51956 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.68■□□□□ 0.58
NEK3P51956 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NEK3P51956 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
NEK3P51956 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NEK3P51956 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
NEK3P51956 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
NEK3P51956 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NEK3P51956 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.67■□□□□ 0.58
NEK3P51956 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.67■□□□□ 0.58
NEK3P51956 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NEK3P51956 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.67■□□□□ 0.58
NEK3P51956 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.67■□□□□ 0.58
NEK3P51956 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NEK3P51956 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.67■□□□□ 0.58
NEK3P51956 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NEK3P51956 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.67■□□□□ 0.58
NEK3P51956 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NEK3P51956 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NEK3P51956 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NEK3P51956 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.67■□□□□ 0.58
NEK3P51956 AC092597.1-201ENST00000487352 616 ntBASIC18.67■□□□□ 0.58
NEK3P51956 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.67■□□□□ 0.58
NEK3P51956 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.67■□□□□ 0.58
NEK3P51956 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.67■□□□□ 0.58
NEK3P51956 AC010240.3-201ENST00000607688 395 ntBASIC18.67■□□□□ 0.58
NEK3P51956 AC116407.4-201ENST00000623319 1061 ntBASIC18.67■□□□□ 0.58
NEK3P51956 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.67■□□□□ 0.58
NEK3P51956 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NEK3P51956 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
NEK3P51956 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
NEK3P51956 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.67■□□□□ 0.58
NEK3P51956 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NEK3P51956 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
NEK3P51956 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.67■□□□□ 0.58
NEK3P51956 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.66■□□□□ 0.58
NEK3P51956 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.66■□□□□ 0.58
NEK3P51956 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.66■□□□□ 0.58
NEK3P51956 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NEK3P51956 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms