Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
HNF4AP41235 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.6■□□□□ 0.41
HNF4AP41235 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
HNF4AP41235 YBX1P2-201ENST00000489612 999 ntBASIC17.6■□□□□ 0.41
HNF4AP41235 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.6■□□□□ 0.41
HNF4AP41235 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HNF4AP41235 AC006011.2-201ENST00000621313 1158 ntBASIC17.6■□□□□ 0.41
HNF4AP41235 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HNF4AP41235 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HNF4AP41235 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.6■□□□□ 0.41
HNF4AP41235 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.6■□□□□ 0.41
HNF4AP41235 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HNF4AP41235 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.6■□□□□ 0.41
HNF4AP41235 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HNF4AP41235 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HNF4AP41235 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HNF4AP41235 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HNF4AP41235 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HNF4AP41235 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.6■□□□□ 0.41
HNF4AP41235 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HNF4AP41235 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
HNF4AP41235 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HNF4AP41235 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.59■□□□□ 0.41
HNF4AP41235 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 AL024508.2-201ENST00000607749 1894 ntBASIC17.59■□□□□ 0.41
HNF4AP41235 OR6D1P-202ENST00000641007 5290 ntBASIC17.59■□□□□ 0.41
HNF4AP41235 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 LINC01126-201ENST00000623515 1646 ntBASIC17.59■□□□□ 0.41
HNF4AP41235 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HNF4AP41235 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 AK4P3-201ENST00000418260 669 ntBASIC17.59■□□□□ 0.41
HNF4AP41235 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.59■□□□□ 0.41
HNF4AP41235 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.59■□□□□ 0.41
HNF4AP41235 AC104076.2-201ENST00000448912 469 ntBASIC17.59■□□□□ 0.41
HNF4AP41235 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
HNF4AP41235 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.59■□□□□ 0.41
HNF4AP41235 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.59■□□□□ 0.41
HNF4AP41235 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.59■□□□□ 0.41
HNF4AP41235 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.59■□□□□ 0.41
HNF4AP41235 AC008687.5-201ENST00000593746 558 ntBASIC17.59■□□□□ 0.41
HNF4AP41235 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.59■□□□□ 0.41
HNF4AP41235 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.59■□□□□ 0.41
HNF4AP41235 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
HNF4AP41235 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.59■□□□□ 0.41
HNF4AP41235 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.59■□□□□ 0.41
HNF4AP41235 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HNF4AP41235 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.59■□□□□ 0.41
HNF4AP41235 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.59■□□□□ 0.41
HNF4AP41235 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
HNF4AP41235 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HNF4AP41235 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HNF4AP41235 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HNF4AP41235 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HNF4AP41235 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
HNF4AP41235 AC093010.1-201ENST00000473625 1624 ntBASIC17.58■□□□□ 0.41
HNF4AP41235 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HNF4AP41235 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HNF4AP41235 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
HNF4AP41235 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HNF4AP41235 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HNF4AP41235 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HNF4AP41235 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
HNF4AP41235 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.58■□□□□ 0.4
HNF4AP41235 AC018470.1-201ENST00000624790 3129 ntBASIC17.58■□□□□ 0.4
HNF4AP41235 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.58■□□□□ 0.4
HNF4AP41235 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.58■□□□□ 0.4
HNF4AP41235 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
HNF4AP41235 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.58■□□□□ 0.4
HNF4AP41235 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.58■□□□□ 0.4
HNF4AP41235 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.58■□□□□ 0.4
HNF4AP41235 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.58■□□□□ 0.4
HNF4AP41235 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.58■□□□□ 0.4
HNF4AP41235 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.58■□□□□ 0.4
HNF4AP41235 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.58■□□□□ 0.4
HNF4AP41235 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.58■□□□□ 0.4
HNF4AP41235 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HNF4AP41235 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms