Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CLPTM1O96005 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 KRT18P29-201ENST00000397031 1267 ntBASIC17.14■□□□□ 0.33
CLPTM1O96005 AC120498.8-201ENST00000614275 531 ntBASIC17.14■□□□□ 0.33
CLPTM1O96005 ITM2C-210ENST00000620962 501 ntBASIC17.14■□□□□ 0.33
CLPTM1O96005 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.14■□□□□ 0.33
CLPTM1O96005 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
CLPTM1O96005 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLPTM1O96005 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.14■□□□□ 0.33
CLPTM1O96005 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CLPTM1O96005 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.13■□□□□ 0.33
CLPTM1O96005 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.13■□□□□ 0.33
CLPTM1O96005 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.13■□□□□ 0.33
CLPTM1O96005 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CLPTM1O96005 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.13■□□□□ 0.33
CLPTM1O96005 AC128676.1-201ENST00000454392 318 ntBASIC17.13■□□□□ 0.33
CLPTM1O96005 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.13■□□□□ 0.33
CLPTM1O96005 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.13■□□□□ 0.33
CLPTM1O96005 AC233263.1-201ENST00000578059 224 ntBASIC17.13■□□□□ 0.33
CLPTM1O96005 TMEM191A-211ENST00000637163 1067 ntBASIC17.13■□□□□ 0.33
CLPTM1O96005 AC073648.6-201ENST00000641589 218 ntBASIC17.13■□□□□ 0.33
CLPTM1O96005 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.13■□□□□ 0.33
CLPTM1O96005 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.13■□□□□ 0.33
CLPTM1O96005 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CLPTM1O96005 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
CLPTM1O96005 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.13■□□□□ 0.33
CLPTM1O96005 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLPTM1O96005 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CLPTM1O96005 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 AC124283.5-201ENST00000624661 1809 ntBASIC17.12■□□□□ 0.33
CLPTM1O96005 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.12■□□□□ 0.33
CLPTM1O96005 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
CLPTM1O96005 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CLPTM1O96005 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.12■□□□□ 0.33
CLPTM1O96005 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.12■□□□□ 0.33
CLPTM1O96005 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.12■□□□□ 0.33
CLPTM1O96005 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 KRT17P3-201ENST00000420566 1262 ntBASIC17.12■□□□□ 0.33
CLPTM1O96005 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.12■□□□□ 0.33
CLPTM1O96005 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.12■□□□□ 0.33
CLPTM1O96005 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.12■□□□□ 0.33
CLPTM1O96005 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.12■□□□□ 0.33
CLPTM1O96005 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CLPTM1O96005 DOC2GP-204ENST00000639052 2548 ntBASIC17.12■□□□□ 0.33
CLPTM1O96005 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CLPTM1O96005 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CLPTM1O96005 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CLPTM1O96005 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLPTM1O96005 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CLPTM1O96005 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.11■□□□□ 0.33
CLPTM1O96005 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.11■□□□□ 0.33
CLPTM1O96005 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
CLPTM1O96005 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms