Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 LINC00265-3P-201ENST00000447588 903 ntBASIC5.61□□□□□ -1.51
SYNE1Q8NF91 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 PRELID1P1-202ENST00000567272 903 ntBASIC5.61□□□□□ -1.51
SYNE1Q8NF91 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 VPS51-217ENST00000639871 243 ntTSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 AL391807.1-203ENST00000604392 2365 ntBASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 TBCB-205ENST00000585746 875 ntTSL 3 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 BNIP3P18-201ENST00000593976 575 ntBASIC5.61□□□□□ -1.51
SYNE1Q8NF91 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 AC106795.1-205ENST00000512851 1056 ntBASIC5.61□□□□□ -1.51
SYNE1Q8NF91 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms