Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
RNF43Q68DV7 PRELID1P1-202ENST00000567272 903 ntBASIC19.05■□□□□ 0.64
RNF43Q68DV7 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.05■□□□□ 0.64
RNF43Q68DV7 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.05■□□□□ 0.64
RNF43Q68DV7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.05■□□□□ 0.64
RNF43Q68DV7 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
RNF43Q68DV7 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
RNF43Q68DV7 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
RNF43Q68DV7 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.05■□□□□ 0.64
RNF43Q68DV7 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF43Q68DV7 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
RNF43Q68DV7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RNF43Q68DV7 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RNF43Q68DV7 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RNF43Q68DV7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
RNF43Q68DV7 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RNF43Q68DV7 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RNF43Q68DV7 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
RNF43Q68DV7 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RNF43Q68DV7 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.04■□□□□ 0.64
RNF43Q68DV7 RN7SL510P-201ENST00000581311 263 ntBASIC19.04■□□□□ 0.64
RNF43Q68DV7 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.04■□□□□ 0.64
RNF43Q68DV7 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RNF43Q68DV7 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RNF43Q68DV7 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.04■□□□□ 0.64
RNF43Q68DV7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RNF43Q68DV7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RNF43Q68DV7 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.04■□□□□ 0.64
RNF43Q68DV7 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RNF43Q68DV7 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF43Q68DV7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
RNF43Q68DV7 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RNF43Q68DV7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF43Q68DV7 KRT8P50-201ENST00000562022 1438 ntBASIC19.03■□□□□ 0.64
RNF43Q68DV7 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.03■□□□□ 0.64
RNF43Q68DV7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
RNF43Q68DV7 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF43Q68DV7 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.03■□□□□ 0.64
RNF43Q68DV7 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.03■□□□□ 0.64
RNF43Q68DV7 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.03■□□□□ 0.64
RNF43Q68DV7 MIR3652-201ENST00000579335 131 ntBASIC19.03■□□□□ 0.64
RNF43Q68DV7 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.03■□□□□ 0.64
RNF43Q68DV7 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RNF43Q68DV7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF43Q68DV7 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RNF43Q68DV7 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF43Q68DV7 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.03■□□□□ 0.64
RNF43Q68DV7 AL391807.1-203ENST00000604392 2365 ntBASIC19.03■□□□□ 0.64
RNF43Q68DV7 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RNF43Q68DV7 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF43Q68DV7 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
RNF43Q68DV7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF43Q68DV7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
RNF43Q68DV7 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.02■□□□□ 0.64
RNF43Q68DV7 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF43Q68DV7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF43Q68DV7 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
RNF43Q68DV7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF43Q68DV7 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RNF43Q68DV7 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RNF43Q68DV7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
RNF43Q68DV7 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RNF43Q68DV7 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF43Q68DV7 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF43Q68DV7 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF43Q68DV7 MIR662-201ENST00000384847 95 ntBASIC19.02■□□□□ 0.64
RNF43Q68DV7 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RNF43Q68DV7 FDX1P1-201ENST00000449115 551 ntBASIC19.02■□□□□ 0.64
RNF43Q68DV7 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.02■□□□□ 0.64
RNF43Q68DV7 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.02■□□□□ 0.64
RNF43Q68DV7 GPALPP1-207ENST00000611650 899 ntBASIC19.02■□□□□ 0.64
RNF43Q68DV7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF43Q68DV7 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.02■□□□□ 0.64
RNF43Q68DV7 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF43Q68DV7 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.02■□□□□ 0.63
RNF43Q68DV7 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
RNF43Q68DV7 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.02■□□□□ 0.63
RNF43Q68DV7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
RNF43Q68DV7 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
RNF43Q68DV7 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
RNF43Q68DV7 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.01■□□□□ 0.63
RNF43Q68DV7 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF43Q68DV7 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
RNF43Q68DV7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.01■□□□□ 0.63
RNF43Q68DV7 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
RNF43Q68DV7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
RNF43Q68DV7 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
RNF43Q68DV7 AC004870.1-201ENST00000315132 882 ntBASIC19.01■□□□□ 0.63
RNF43Q68DV7 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms