Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.25■□□□□ 0.35
PROM1O43490 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.25■□□□□ 0.35
PROM1O43490 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.25■□□□□ 0.35
PROM1O43490 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 SPDYE15P-201ENST00000424157 909 ntBASIC17.25■□□□□ 0.35
PROM1O43490 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.25■□□□□ 0.35
PROM1O43490 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.25■□□□□ 0.35
PROM1O43490 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
PROM1O43490 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.25■□□□□ 0.35
PROM1O43490 AC079602.3-201ENST00000623931 403 ntBASIC17.25■□□□□ 0.35
PROM1O43490 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
PROM1O43490 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.25■□□□□ 0.35
PROM1O43490 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
PROM1O43490 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
PROM1O43490 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.25■□□□□ 0.35
PROM1O43490 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.25■□□□□ 0.35
PROM1O43490 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.25■□□□□ 0.35
PROM1O43490 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.25■□□□□ 0.35
PROM1O43490 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.25■□□□□ 0.35
PROM1O43490 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PROM1O43490 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
PROM1O43490 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
PROM1O43490 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.24■□□□□ 0.35
PROM1O43490 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.24■□□□□ 0.35
PROM1O43490 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.24■□□□□ 0.35
PROM1O43490 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
PROM1O43490 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.24■□□□□ 0.35
PROM1O43490 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.24■□□□□ 0.35
PROM1O43490 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.24■□□□□ 0.35
PROM1O43490 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.24■□□□□ 0.35
PROM1O43490 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.24■□□□□ 0.35
PROM1O43490 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.24■□□□□ 0.35
PROM1O43490 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.24■□□□□ 0.35
PROM1O43490 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 AL391807.1-203ENST00000604392 2365 ntBASIC17.24■□□□□ 0.35
PROM1O43490 AL096828.2-201ENST00000567259 1965 ntBASIC17.24■□□□□ 0.35
PROM1O43490 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PROM1O43490 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
PROM1O43490 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
PROM1O43490 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.23■□□□□ 0.35
PROM1O43490 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PROM1O43490 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PROM1O43490 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.23■□□□□ 0.35
PROM1O43490 KRT18P38-201ENST00000449496 1282 ntBASIC17.23■□□□□ 0.35
PROM1O43490 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.23■□□□□ 0.35
PROM1O43490 AC063952.2-201ENST00000498792 1227 ntBASIC17.23■□□□□ 0.35
PROM1O43490 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.23■□□□□ 0.35
PROM1O43490 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PROM1O43490 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
PROM1O43490 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.23■□□□□ 0.35
PROM1O43490 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PROM1O43490 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.23■□□□□ 0.35
PROM1O43490 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PROM1O43490 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PROM1O43490 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms