Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 FLJ13224-201ENST00000313737 1514 ntBASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC65Q8IXS2 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 AK4P3-201ENST00000418260 669 ntBASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 SPDYE15P-201ENST00000424157 909 ntBASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 TSPY5P-201ENST00000426936 936 ntBASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 AC006011.2-201ENST00000621313 1158 ntBASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC65Q8IXS2 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 HOMER2P1-201ENST00000455653 964 ntBASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 AL136038.4-201ENST00000603606 1261 ntBASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC65Q8IXS2 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 AL391807.1-203ENST00000604392 2365 ntBASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 AC018470.1-201ENST00000624790 3129 ntBASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 AC079602.3-201ENST00000623931 403 ntBASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC65Q8IXS2 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC65Q8IXS2 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms