Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TOP3BO95985 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.65■□□□□ 0.58
TOP3BO95985 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TOP3BO95985 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TOP3BO95985 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.65■□□□□ 0.58
TOP3BO95985 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TOP3BO95985 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TOP3BO95985 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TOP3BO95985 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TOP3BO95985 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TOP3BO95985 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.64■□□□□ 0.58
TOP3BO95985 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
TOP3BO95985 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.64■□□□□ 0.58
TOP3BO95985 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
TOP3BO95985 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
TOP3BO95985 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.64■□□□□ 0.57
TOP3BO95985 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.64■□□□□ 0.57
TOP3BO95985 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 AP000997.3-201ENST00000623333 2250 ntBASIC18.64■□□□□ 0.57
TOP3BO95985 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
TOP3BO95985 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.64■□□□□ 0.57
TOP3BO95985 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.64■□□□□ 0.57
TOP3BO95985 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.64■□□□□ 0.57
TOP3BO95985 AP003041.3-201ENST00000527151 707 ntBASIC18.64■□□□□ 0.57
TOP3BO95985 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.64■□□□□ 0.57
TOP3BO95985 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.64■□□□□ 0.57
TOP3BO95985 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
TOP3BO95985 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TOP3BO95985 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.64■□□□□ 0.57
TOP3BO95985 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.64■□□□□ 0.57
TOP3BO95985 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TOP3BO95985 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
TOP3BO95985 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
TOP3BO95985 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.63■□□□□ 0.57
TOP3BO95985 AC135776.1-201ENST00000319817 2481 ntBASIC18.63■□□□□ 0.57
TOP3BO95985 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.63■□□□□ 0.57
TOP3BO95985 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.63■□□□□ 0.57
TOP3BO95985 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 FAAHP1-202ENST00000446499 1238 ntBASIC18.63■□□□□ 0.57
TOP3BO95985 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.63■□□□□ 0.57
TOP3BO95985 EMBP1-201ENST00000458200 901 ntBASIC18.63■□□□□ 0.57
TOP3BO95985 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.63■□□□□ 0.57
TOP3BO95985 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TOP3BO95985 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 AL031008.1-201ENST00000619963 541 ntBASIC18.63■□□□□ 0.57
TOP3BO95985 AC068587.9-201ENST00000641814 219 ntBASIC18.63■□□□□ 0.57
TOP3BO95985 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.63■□□□□ 0.57
TOP3BO95985 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.63■□□□□ 0.57
TOP3BO95985 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.63■□□□□ 0.57
TOP3BO95985 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
TOP3BO95985 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TOP3BO95985 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.62■□□□□ 0.57
TOP3BO95985 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TOP3BO95985 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TOP3BO95985 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.62■□□□□ 0.57
TOP3BO95985 SPDYE15P-201ENST00000424157 909 ntBASIC18.62■□□□□ 0.57
TOP3BO95985 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.62■□□□□ 0.57
TOP3BO95985 GCSHP2-201ENST00000560971 527 ntBASIC18.62■□□□□ 0.57
TOP3BO95985 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.62■□□□□ 0.57
TOP3BO95985 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.62■□□□□ 0.57
TOP3BO95985 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.62■□□□□ 0.57
TOP3BO95985 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.62■□□□□ 0.57
TOP3BO95985 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TOP3BO95985 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms