Protein–RNA interactions for Protein: O43734

TRAF3IP2, Adapter protein CIKS, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3IP2O43734 AL391807.1-203ENST00000604392 2365 ntBASIC16.22■□□□□ 0.19
TRAF3IP2O43734 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.22■□□□□ 0.19
TRAF3IP2O43734 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAF3IP2O43734 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAF3IP2O43734 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAF3IP2O43734 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAF3IP2O43734 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAF3IP2O43734 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAF3IP2O43734 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAF3IP2O43734 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TRAF3IP2O43734 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAF3IP2O43734 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
TRAF3IP2O43734 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 HLA-F-220ENST00000434407 884 ntBASIC16.21■□□□□ 0.19
TRAF3IP2O43734 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 AL359075.1-203ENST00000462729 1002 ntBASIC16.21■□□□□ 0.19
TRAF3IP2O43734 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 AC063952.2-201ENST00000498792 1227 ntBASIC16.21■□□□□ 0.19
TRAF3IP2O43734 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 AC008687.5-201ENST00000593746 558 ntBASIC16.21■□□□□ 0.19
TRAF3IP2O43734 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAF3IP2O43734 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
TRAF3IP2O43734 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRAF3IP2O43734 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRAF3IP2O43734 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
TRAF3IP2O43734 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRAF3IP2O43734 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 AC092597.1-201ENST00000487352 616 ntBASIC16.2■□□□□ 0.18
TRAF3IP2O43734 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRAF3IP2O43734 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 AC138028.4-201ENST00000564984 1845 ntBASIC16.19■□□□□ 0.18
TRAF3IP2O43734 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAF3IP2O43734 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms