Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.58■□□□□ 0.56
CBX4O00257 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CBX4O00257 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.57■□□□□ 0.56
CBX4O00257 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.57■□□□□ 0.56
CBX4O00257 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 AL353692.3-201ENST00000407031 1396 ntBASIC18.57■□□□□ 0.56
CBX4O00257 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.57■□□□□ 0.56
CBX4O00257 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.57■□□□□ 0.56
CBX4O00257 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.57■□□□□ 0.56
CBX4O00257 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CBX4O00257 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.57■□□□□ 0.56
CBX4O00257 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
CBX4O00257 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.57■□□□□ 0.56
CBX4O00257 TSSC2-201ENST00000450217 709 ntBASIC18.57■□□□□ 0.56
CBX4O00257 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.57■□□□□ 0.56
CBX4O00257 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.57■□□□□ 0.56
CBX4O00257 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.57■□□□□ 0.56
CBX4O00257 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.57■□□□□ 0.56
CBX4O00257 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.57■□□□□ 0.56
CBX4O00257 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.57■□□□□ 0.56
CBX4O00257 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CBX4O00257 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CBX4O00257 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
CBX4O00257 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.56■□□□□ 0.56
CBX4O00257 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CBX4O00257 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CBX4O00257 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.56■□□□□ 0.56
CBX4O00257 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.56■□□□□ 0.56
CBX4O00257 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.56■□□□□ 0.56
CBX4O00257 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.56■□□□□ 0.56
CBX4O00257 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.56■□□□□ 0.56
CBX4O00257 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CBX4O00257 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CBX4O00257 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.56■□□□□ 0.56
CBX4O00257 AC090164.3-201ENST00000610780 2143 ntBASIC18.56■□□□□ 0.56
CBX4O00257 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CBX4O00257 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.55■□□□□ 0.56
CBX4O00257 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.55■□□□□ 0.56
CBX4O00257 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.55■□□□□ 0.56
CBX4O00257 AC113404.2-201ENST00000507884 177 ntBASIC18.55■□□□□ 0.56
CBX4O00257 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.55■□□□□ 0.56
CBX4O00257 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.55■□□□□ 0.56
CBX4O00257 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.55■□□□□ 0.56
CBX4O00257 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.55■□□□□ 0.56
CBX4O00257 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.55■□□□□ 0.56
CBX4O00257 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
CBX4O00257 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CBX4O00257 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms