Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 LINC01521-201ENST00000504184 1943 ntBASIC5.63□□□□□ -1.51
SYNE1Q8NF91 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AC023511.2-201ENST00000618803 211 ntBASIC5.63□□□□□ -1.51
SYNE1Q8NF91 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 NIN-202ENST00000324330 4364 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 TOB2P1-201ENST00000469761 992 ntBASIC5.63□□□□□ -1.51
SYNE1Q8NF91 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 FOSL1P1-201ENST00000511041 816 ntBASIC5.63□□□□□ -1.51
SYNE1Q8NF91 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 MIR3652-201ENST00000579335 131 ntBASIC5.63□□□□□ -1.51
SYNE1Q8NF91 IGHV3-41-201ENST00000613121 348 ntBASIC5.63□□□□□ -1.51
SYNE1Q8NF91 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 NME4-212ENST00000621774 904 ntTSL 3 BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SYNE1Q8NF91 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms