Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 MIR3687-2-201ENST00000577708 61 ntBASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 MIR3687-1-201ENST00000614492 61 ntBASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 MYLKP1-201ENST00000509077 1580 ntBASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 MTDHP5-201ENST00000598980 586 ntBASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 AC004706.3-202ENST00000621574 984 ntBASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 AL078644.1-201ENST00000609881 752 ntBASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC12.2□□□□□ -0.46
VPS13DQ5THJ4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 CYMP-203ENST00000474680 1263 ntBASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 AL596442.2-201ENST00000610240 980 ntBASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 YBX1P5-201ENST00000509441 847 ntBASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 HCG4B-203ENST00000450128 991 ntBASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 AC064836.3-201ENST00000607928 673 ntBASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
VPS13DQ5THJ4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 AC097374.2-201ENST00000618617 1306 ntBASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 PMP22-202ENST00000395936 816 ntTSL 3 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 HLA-J-201ENST00000462773 1622 ntBASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 FAM8A3P-201ENST00000427218 844 ntBASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC12.18□□□□□ -0.46
VPS13DQ5THJ4 MIR4469-201ENST00000583919 79 ntBASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms