Protein–RNA interactions for Protein: P78426

NKX6-1, Homeobox protein Nkx-6.1, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-1P78426 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX6-1P78426 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX6-1P78426 AC005332.8-201ENST00000622750 2735 ntBASIC16.07■□□□□ 0.16
NKX6-1P78426 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.07■□□□□ 0.16
NKX6-1P78426 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX6-1P78426 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NKX6-1P78426 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
NKX6-1P78426 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 AC020916.1-201ENST00000587762 1774 ntBASIC16.06■□□□□ 0.16
NKX6-1P78426 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX6-1P78426 KRT8P7-201ENST00000533003 1432 ntBASIC16.06■□□□□ 0.16
NKX6-1P78426 HOXB1-202ENST00000577092 1414 ntBASIC16.06■□□□□ 0.16
NKX6-1P78426 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
NKX6-1P78426 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.06■□□□□ 0.16
NKX6-1P78426 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.06■□□□□ 0.16
NKX6-1P78426 PVRIG2P-201ENST00000435460 978 ntBASIC16.06■□□□□ 0.16
NKX6-1P78426 AP000347.1-202ENST00000435868 847 ntBASIC16.06■□□□□ 0.16
NKX6-1P78426 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX6-1P78426 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
NKX6-1P78426 RASA4DP-201ENST00000460726 1199 ntBASIC16.06■□□□□ 0.16
NKX6-1P78426 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.06■□□□□ 0.16
NKX6-1P78426 AC011498.5-201ENST00000592027 486 ntBASIC16.06■□□□□ 0.16
NKX6-1P78426 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 GPALPP1-207ENST00000611650 899 ntBASIC16.06■□□□□ 0.16
NKX6-1P78426 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX6-1P78426 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX6-1P78426 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX6-1P78426 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX6-1P78426 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX6-1P78426 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
NKX6-1P78426 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 MTMR9LP-203ENST00000426597 1545 ntBASIC16.05■□□□□ 0.16
NKX6-1P78426 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
NKX6-1P78426 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX6-1P78426 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
NKX6-1P78426 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
NKX6-1P78426 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.05■□□□□ 0.16
NKX6-1P78426 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.05■□□□□ 0.16
NKX6-1P78426 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX6-1P78426 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX6-1P78426 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 AC112497.1-201ENST00000624824 639 ntBASIC16.05■□□□□ 0.16
NKX6-1P78426 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX6-1P78426 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX6-1P78426 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.05■□□□□ 0.16
NKX6-1P78426 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX6-1P78426 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX6-1P78426 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
NKX6-1P78426 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.05■□□□□ 0.16
NKX6-1P78426 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX6-1P78426 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
NKX6-1P78426 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
NKX6-1P78426 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
NKX6-1P78426 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX6-1P78426 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
NKX6-1P78426 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX6-1P78426 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.04■□□□□ 0.16
NKX6-1P78426 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX6-1P78426 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX6-1P78426 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX6-1P78426 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX6-1P78426 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.04■□□□□ 0.16
NKX6-1P78426 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.04■□□□□ 0.16
NKX6-1P78426 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.04■□□□□ 0.16
NKX6-1P78426 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.04■□□□□ 0.16
NKX6-1P78426 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX6-1P78426 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX6-1P78426 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
NKX6-1P78426 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX6-1P78426 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX6-1P78426 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
NKX6-1P78426 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX6-1P78426 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms