Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TCRBV7S3A2A0A539 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 TSPY14P-201ENST00000303979 915 ntBASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 TMEM191A-211ENST00000637163 1067 ntBASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
TCRBV7S3A2A0A539 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 AC139713.2-201ENST00000641328 2723 ntBASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.52■□□□□ 0.56
TCRBV7S3A2A0A539 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
TCRBV7S3A2A0A539 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.52■□□□□ 0.55
TCRBV7S3A2A0A539 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TCRBV7S3A2A0A539 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.52■□□□□ 0.55
TCRBV7S3A2A0A539 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 AL645608.8-201ENST00000606034 2086 ntBASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 KRT18P55-202ENST00000578578 1546 ntBASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 C2orf69P3-201ENST00000565542 1120 ntBASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 AC010240.3-201ENST00000607688 395 ntBASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 AC010947.1-201ENST00000623454 693 ntBASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
TCRBV7S3A2A0A539 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 AC132938.6-201ENST00000623828 1655 ntBASIC18.5■□□□□ 0.55
TCRBV7S3A2A0A539 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms