Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SPENQ96T58 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
SPENQ96T58 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC16.39■□□□□ 0.21
SPENQ96T58 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.39■□□□□ 0.21
SPENQ96T58 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SPENQ96T58 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SPENQ96T58 AC009947.1-201ENST00000444350 727 ntBASIC16.39■□□□□ 0.21
SPENQ96T58 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SPENQ96T58 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SPENQ96T58 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.39■□□□□ 0.21
SPENQ96T58 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.39■□□□□ 0.21
SPENQ96T58 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.39■□□□□ 0.21
SPENQ96T58 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SPENQ96T58 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SPENQ96T58 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.39■□□□□ 0.21
SPENQ96T58 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.39■□□□□ 0.21
SPENQ96T58 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.39■□□□□ 0.21
SPENQ96T58 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.39■□□□□ 0.21
SPENQ96T58 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.39■□□□□ 0.21
SPENQ96T58 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.39■□□□□ 0.21
SPENQ96T58 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.39■□□□□ 0.21
SPENQ96T58 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SPENQ96T58 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SPENQ96T58 FEM1AP3-201ENST00000403722 1741 ntBASIC16.38■□□□□ 0.21
SPENQ96T58 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.38■□□□□ 0.21
SPENQ96T58 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.38■□□□□ 0.21
SPENQ96T58 AC068587.9-201ENST00000641814 219 ntBASIC16.38■□□□□ 0.21
SPENQ96T58 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.38■□□□□ 0.21
SPENQ96T58 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 METTL21AP1-201ENST00000438852 635 ntBASIC16.38■□□□□ 0.21
SPENQ96T58 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.38■□□□□ 0.21
SPENQ96T58 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 HLA-J-201ENST00000462773 1622 ntBASIC16.38■□□□□ 0.21
SPENQ96T58 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SPENQ96T58 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SPENQ96T58 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.38■□□□□ 0.21
SPENQ96T58 MIR3687-2-201ENST00000577708 61 ntBASIC16.38■□□□□ 0.21
SPENQ96T58 MIR3687-1-201ENST00000614492 61 ntBASIC16.38■□□□□ 0.21
SPENQ96T58 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.37■□□□□ 0.21
SPENQ96T58 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.37■□□□□ 0.21
SPENQ96T58 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC16.37■□□□□ 0.21
SPENQ96T58 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.37■□□□□ 0.21
SPENQ96T58 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.37■□□□□ 0.21
SPENQ96T58 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SPENQ96T58 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
SPENQ96T58 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.37■□□□□ 0.21
SPENQ96T58 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SPENQ96T58 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.37■□□□□ 0.21
SPENQ96T58 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 CNN2P11-201ENST00000429351 262 ntBASIC16.37■□□□□ 0.21
SPENQ96T58 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.37■□□□□ 0.21
SPENQ96T58 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.37■□□□□ 0.21
SPENQ96T58 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 AC132938.6-201ENST00000623828 1655 ntBASIC16.37■□□□□ 0.21
SPENQ96T58 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SPENQ96T58 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.37■□□□□ 0.21
SPENQ96T58 Z83851.2-201ENST00000609564 659 ntBASIC16.37■□□□□ 0.21
SPENQ96T58 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SPENQ96T58 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SPENQ96T58 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.36■□□□□ 0.21
SPENQ96T58 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.36■□□□□ 0.21
SPENQ96T58 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SPENQ96T58 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SPENQ96T58 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SPENQ96T58 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
SPENQ96T58 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SPENQ96T58 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SPENQ96T58 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.36■□□□□ 0.21
SPENQ96T58 AC011467.2-201ENST00000598425 242 ntBASIC16.36■□□□□ 0.21
SPENQ96T58 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
SPENQ96T58 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.36■□□□□ 0.21
SPENQ96T58 AL596442.2-201ENST00000610240 980 ntBASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms