Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 KRT89P-201ENST00000620027 1478 ntBASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 ZNF444P1-201ENST00000559497 298 ntBASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 HYMAI.1-201ENST00000620949 238 ntBASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.6■□□□□ 0.57
SHROOM3Q8TF72 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 NOC2LP1-202ENST00000452600 2235 ntBASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 AC005332.1-201ENST00000577698 1310 ntBASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.59■□□□□ 0.57
SHROOM3Q8TF72 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM3Q8TF72 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM3Q8TF72 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM3Q8TF72 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SHROOM3Q8TF72 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM3Q8TF72 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM3Q8TF72 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM3Q8TF72 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM3Q8TF72 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM3Q8TF72 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 PCED1CP-201ENST00000419887 785 ntBASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 AC068880.1-201ENST00000507289 2297 ntBASIC18.58■□□□□ 0.56
SHROOM3Q8TF72 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 AC140113.3-201ENST00000605663 199 ntBASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHROOM3Q8TF72 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms