Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RUNDC3AQ59EK9 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.26■□□□□ 0.35
RUNDC3AQ59EK9 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
RUNDC3AQ59EK9 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RUNDC3AQ59EK9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RUNDC3AQ59EK9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.26■□□□□ 0.35
RUNDC3AQ59EK9 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RUNDC3AQ59EK9 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 AC116562.2-201ENST00000507042 360 ntBASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
RUNDC3AQ59EK9 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RUNDC3AQ59EK9 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 MIR4674-201ENST00000582457 87 ntBASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 CD177P1-201ENST00000606252 935 ntBASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RUNDC3AQ59EK9 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms