Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
NEK3P51956 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NEK3P51956 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NEK3P51956 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NEK3P51956 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
NEK3P51956 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
NEK3P51956 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NEK3P51956 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NEK3P51956 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NEK3P51956 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.83■□□□□ 0.6
NEK3P51956 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NEK3P51956 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
NEK3P51956 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 AC020763.4-201ENST00000623414 4170 ntBASIC18.82■□□□□ 0.6
NEK3P51956 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
NEK3P51956 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
NEK3P51956 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.82■□□□□ 0.6
NEK3P51956 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.82■□□□□ 0.6
NEK3P51956 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.82■□□□□ 0.6
NEK3P51956 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.82■□□□□ 0.6
NEK3P51956 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.82■□□□□ 0.6
NEK3P51956 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.82■□□□□ 0.6
NEK3P51956 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.82■□□□□ 0.6
NEK3P51956 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.82■□□□□ 0.6
NEK3P51956 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
NEK3P51956 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
NEK3P51956 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NEK3P51956 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.81■□□□□ 0.6
NEK3P51956 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.81■□□□□ 0.6
NEK3P51956 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
NEK3P51956 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.81■□□□□ 0.6
NEK3P51956 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.81■□□□□ 0.6
NEK3P51956 AC024243.1-201ENST00000609234 778 ntBASIC18.81■□□□□ 0.6
NEK3P51956 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.81■□□□□ 0.6
NEK3P51956 KRT8P32-201ENST00000512863 1461 ntBASIC18.81■□□□□ 0.6
NEK3P51956 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.81■□□□□ 0.6
NEK3P51956 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
NEK3P51956 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
NEK3P51956 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
NEK3P51956 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
NEK3P51956 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
NEK3P51956 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
NEK3P51956 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
NEK3P51956 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 AC008556.1-201ENST00000610908 2040 ntBASIC18.8■□□□□ 0.6
NEK3P51956 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.8■□□□□ 0.6
NEK3P51956 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
NEK3P51956 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.8■□□□□ 0.6
NEK3P51956 AC034232.1-201ENST00000506026 1064 ntBASIC18.8■□□□□ 0.6
NEK3P51956 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.8■□□□□ 0.6
NEK3P51956 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.8■□□□□ 0.6
NEK3P51956 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.8■□□□□ 0.6
NEK3P51956 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
NEK3P51956 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.8■□□□□ 0.6
NEK3P51956 AL121956.5-201ENST00000625261 221 ntBASIC18.8■□□□□ 0.6
NEK3P51956 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.8■□□□□ 0.6
NEK3P51956 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.8■□□□□ 0.6
NEK3P51956 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.8■□□□□ 0.6
NEK3P51956 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
NEK3P51956 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
NEK3P51956 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NEK3P51956 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms