Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC099343.3-201ENST00000605834 2503 ntBASIC14.12□□□□□ -0.15
HOXD3P31249 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD3P31249 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 KRT18P1-202ENST00000452408 1331 ntBASIC14.12□□□□□ -0.15
HOXD3P31249 TNXA-203ENST00000507684 2038 ntBASIC14.12□□□□□ -0.15
HOXD3P31249 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD3P31249 AC009102.3-201ENST00000623118 1491 ntBASIC14.12□□□□□ -0.15
HOXD3P31249 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC14.12□□□□□ -0.15
HOXD3P31249 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXD3P31249 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXD3P31249 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXD3P31249 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
HOXD3P31249 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXD3P31249 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC14.11□□□□□ -0.15
HOXD3P31249 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 HLA-F-220ENST00000434407 884 ntBASIC14.11□□□□□ -0.15
HOXD3P31249 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 KRT8P26-201ENST00000534154 1276 ntBASIC14.11□□□□□ -0.15
HOXD3P31249 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 REEP1-209ENST00000541910 969 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXD3P31249 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXD3P31249 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC14.11□□□□□ -0.15
HOXD3P31249 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC14.11□□□□□ -0.15
HOXD3P31249 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXD3P31249 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC14.11□□□□□ -0.15
HOXD3P31249 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.11□□□□□ -0.15
HOXD3P31249 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 HTR7P1-202ENST00000624664 4411 ntBASIC14.11□□□□□ -0.15
HOXD3P31249 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HOXD3P31249 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HOXD3P31249 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXD3P31249 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC14.1□□□□□ -0.15
HOXD3P31249 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
HOXD3P31249 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXD3P31249 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HOXD3P31249 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXD3P31249 TSPY22P-201ENST00000427496 604 ntBASIC14.1□□□□□ -0.15
HOXD3P31249 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXD3P31249 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXD3P31249 AP000867.3-201ENST00000524675 377 ntBASIC14.1□□□□□ -0.15
HOXD3P31249 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.1□□□□□ -0.15
HOXD3P31249 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXD3P31249 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXD3P31249 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
HOXD3P31249 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
HOXD3P31249 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXD3P31249 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
HOXD3P31249 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HOXD3P31249 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HOXD3P31249 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXD3P31249 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
HOXD3P31249 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HOXD3P31249 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD3P31249 CHCHD2P8-201ENST00000429873 447 ntBASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms