Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CROCCP1-201ENST00000426910 5675 ntBASIC14.18□□□□□ -0.14
CXCL1P09341 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC14.18□□□□□ -0.14
CXCL1P09341 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC14.18□□□□□ -0.14
CXCL1P09341 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CXCL1P09341 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.17□□□□□ -0.14
CXCL1P09341 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 MOK-233ENST00000524214 1539 ntTSL 2 BASIC14.17□□□□□ -0.14
CXCL1P09341 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CXCL1P09341 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CXCL1P09341 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC14.17□□□□□ -0.14
CXCL1P09341 DUX4L16-201ENST00000555130 1264 ntBASIC14.17□□□□□ -0.14
CXCL1P09341 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC14.17□□□□□ -0.14
CXCL1P09341 WWOX-218ENST00000627394 894 ntTSL 5 BASIC14.17□□□□□ -0.14
CXCL1P09341 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC14.17□□□□□ -0.14
CXCL1P09341 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.17□□□□□ -0.14
CXCL1P09341 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC14.17□□□□□ -0.14
CXCL1P09341 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CXCL1P09341 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CXCL1P09341 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC14.16□□□□□ -0.14
CXCL1P09341 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.16□□□□□ -0.14
CXCL1P09341 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 HSCB-202ENST00000398941 955 ntTSL 2 BASIC14.16□□□□□ -0.14
CXCL1P09341 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC14.16□□□□□ -0.14
CXCL1P09341 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC14.16□□□□□ -0.14
CXCL1P09341 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC14.16□□□□□ -0.14
CXCL1P09341 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CXCL1P09341 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.16□□□□□ -0.14
CXCL1P09341 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.16□□□□□ -0.14
CXCL1P09341 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CXCL1P09341 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
CXCL1P09341 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
CXCL1P09341 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CXCL1P09341 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.16□□□□□ -0.14
CXCL1P09341 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.16□□□□□ -0.14
CXCL1P09341 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.16□□□□□ -0.14
CXCL1P09341 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CXCL1P09341 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 AC010980.2-201ENST00000587099 1412 ntBASIC14.15□□□□□ -0.14
CXCL1P09341 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
CXCL1P09341 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CXCL1P09341 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CXCL1P09341 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CXCL1P09341 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.15□□□□□ -0.14
CXCL1P09341 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CXCL1P09341 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CXCL1P09341 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CXCL1P09341 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms