Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.28■□□□□ 0.52
SHOX2O60902 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOX2O60902 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SHOX2O60902 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOX2O60902 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.28■□□□□ 0.52
SHOX2O60902 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOX2O60902 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOX2O60902 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOX2O60902 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
SHOX2O60902 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.28■□□□□ 0.52
SHOX2O60902 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.28■□□□□ 0.52
SHOX2O60902 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.28■□□□□ 0.52
SHOX2O60902 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.28■□□□□ 0.52
SHOX2O60902 MIR6821-201ENST00000617625 74 ntBASIC18.28■□□□□ 0.52
SHOX2O60902 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SHOX2O60902 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOX2O60902 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOX2O60902 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.28■□□□□ 0.52
SHOX2O60902 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.28■□□□□ 0.52
SHOX2O60902 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SHOX2O60902 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOX2O60902 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHOX2O60902 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHOX2O60902 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHOX2O60902 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHOX2O60902 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.27■□□□□ 0.52
SHOX2O60902 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.27■□□□□ 0.52
SHOX2O60902 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHOX2O60902 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.27■□□□□ 0.52
SHOX2O60902 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHOX2O60902 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHOX2O60902 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.27■□□□□ 0.52
SHOX2O60902 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHOX2O60902 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHOX2O60902 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
SHOX2O60902 KRT8P3-201ENST00000519669 1449 ntBASIC18.27■□□□□ 0.52
SHOX2O60902 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.27■□□□□ 0.52
SHOX2O60902 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.27■□□□□ 0.52
SHOX2O60902 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.27■□□□□ 0.52
SHOX2O60902 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.27■□□□□ 0.52
SHOX2O60902 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.27■□□□□ 0.52
SHOX2O60902 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.27■□□□□ 0.52
SHOX2O60902 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHOX2O60902 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SHOX2O60902 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SHOX2O60902 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
SHOX2O60902 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHOX2O60902 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SHOX2O60902 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.27■□□□□ 0.51
SHOX2O60902 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHOX2O60902 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
SHOX2O60902 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.27■□□□□ 0.51
SHOX2O60902 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.27■□□□□ 0.51
SHOX2O60902 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SHOX2O60902 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SHOX2O60902 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.26■□□□□ 0.51
SHOX2O60902 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.26■□□□□ 0.51
SHOX2O60902 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SHOX2O60902 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SHOX2O60902 AC092437.1-201ENST00000624794 1048 ntBASIC18.26■□□□□ 0.51
SHOX2O60902 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.26■□□□□ 0.51
SHOX2O60902 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.26■□□□□ 0.51
SHOX2O60902 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 AC093010.1-201ENST00000473625 1624 ntBASIC18.26■□□□□ 0.51
SHOX2O60902 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SHOX2O60902 AC007950.2-201ENST00000615045 2347 ntBASIC18.26■□□□□ 0.51
SHOX2O60902 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.26■□□□□ 0.51
SHOX2O60902 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHOX2O60902 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SHOX2O60902 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.25■□□□□ 0.51
SHOX2O60902 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
SHOX2O60902 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.25■□□□□ 0.51
SHOX2O60902 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SHOX2O60902 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.25■□□□□ 0.51
SHOX2O60902 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
SHOX2O60902 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 AC092850.2-201ENST00000623821 2697 ntBASIC18.25■□□□□ 0.51
SHOX2O60902 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOX2O60902 CYP2T1P-201ENST00000432607 1285 ntBASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms