Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.58■□□□□ 0.24
SSX4O60224 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
SSX4O60224 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SSX4O60224 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SSX4O60224 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SSX4O60224 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.57■□□□□ 0.24
SSX4O60224 CICP6-201ENST00000457191 2729 ntBASIC16.57■□□□□ 0.24
SSX4O60224 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SSX4O60224 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
SSX4O60224 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.57■□□□□ 0.24
SSX4O60224 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SSX4O60224 TFP1-202ENST00000475455 1573 ntBASIC16.57■□□□□ 0.24
SSX4O60224 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SSX4O60224 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.57■□□□□ 0.24
SSX4O60224 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.57■□□□□ 0.24
SSX4O60224 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
SSX4O60224 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.57■□□□□ 0.24
SSX4O60224 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.57■□□□□ 0.24
SSX4O60224 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.57■□□□□ 0.24
SSX4O60224 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.57■□□□□ 0.24
SSX4O60224 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
SSX4O60224 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
SSX4O60224 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 AC108860.2-201ENST00000562760 2183 ntBASIC16.57■□□□□ 0.24
SSX4O60224 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
SSX4O60224 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SSX4O60224 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX4O60224 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SSX4O60224 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SSX4O60224 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
SSX4O60224 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 TERF1P1-201ENST00000311003 1181 ntBASIC16.56■□□□□ 0.24
SSX4O60224 LIN28AP1-201ENST00000429574 405 ntBASIC16.56■□□□□ 0.24
SSX4O60224 SLC25A3P1-201ENST00000443844 931 ntBASIC16.56■□□□□ 0.24
SSX4O60224 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.56■□□□□ 0.24
SSX4O60224 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX4O60224 C2orf69P3-201ENST00000565542 1120 ntBASIC16.56■□□□□ 0.24
SSX4O60224 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.56■□□□□ 0.24
SSX4O60224 AL445675.2-201ENST00000620291 557 ntBASIC16.56■□□□□ 0.24
SSX4O60224 AC131212.4-201ENST00000623606 975 ntBASIC16.56■□□□□ 0.24
SSX4O60224 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SSX4O60224 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
SSX4O60224 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
SSX4O60224 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.56■□□□□ 0.24
SSX4O60224 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
SSX4O60224 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 AD000864.1-201ENST00000624076 2295 ntBASIC16.56■□□□□ 0.24
SSX4O60224 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SSX4O60224 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.55■□□□□ 0.24
SSX4O60224 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SSX4O60224 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms