Protein–RNA interactions for Protein: Q9Y696

CLIC4, Chloride intracellular channel protein 4, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4Q9Y696 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 SLC25A6P5-201ENST00000435663 894 ntBASIC20.87■□□□□ 0.93
CLIC4Q9Y696 AC009947.2-201ENST00000444014 672 ntBASIC20.87■□□□□ 0.93
CLIC4Q9Y696 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 SEC1P-202ENST00000473944 940 ntBASIC20.87■□□□□ 0.93
CLIC4Q9Y696 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 AC010240.3-201ENST00000607688 395 ntBASIC20.87■□□□□ 0.93
CLIC4Q9Y696 AC024243.1-201ENST00000609234 778 ntBASIC20.87■□□□□ 0.93
CLIC4Q9Y696 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLIC4Q9Y696 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIC4Q9Y696 LINC00896-202ENST00000609602 2128 ntBASIC20.86■□□□□ 0.93
CLIC4Q9Y696 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 AC128688.1-201ENST00000487626 519 ntBASIC20.85■□□□□ 0.93
CLIC4Q9Y696 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.85■□□□□ 0.93
CLIC4Q9Y696 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CLIC4Q9Y696 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIC4Q9Y696 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIC4Q9Y696 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CLIC4Q9Y696 AC012317.2-201ENST00000623305 2251 ntBASIC20.84■□□□□ 0.93
CLIC4Q9Y696 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.84■□□□□ 0.93
CLIC4Q9Y696 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.84■□□□□ 0.93
CLIC4Q9Y696 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.84■□□□□ 0.93
CLIC4Q9Y696 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CLIC4Q9Y696 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.84■□□□□ 0.93
CLIC4Q9Y696 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.84■□□□□ 0.93
CLIC4Q9Y696 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.84■□□□□ 0.93
CLIC4Q9Y696 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.84■□□□□ 0.93
CLIC4Q9Y696 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIC4Q9Y696 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CLIC4Q9Y696 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms