Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 AC233263.1-201ENST00000578059 224 ntBASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC15.76■□□□□ 0.11
CHMP1AQ9HD42 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 Z85996.1-201ENST00000494644 937 ntBASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CHMP1AQ9HD42 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 PRSS44-201ENST00000515154 1146 ntBASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 LY6E-205ENST00000519611 635 ntTSL 3 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 KRT8P11-201ENST00000409686 1436 ntBASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 LINC00896-202ENST00000609602 2128 ntBASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.74■□□□□ 0.11
CHMP1AQ9HD42 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms