Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.65■□□□□ 0.58
CDH4P55283 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.65■□□□□ 0.58
CDH4P55283 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
CDH4P55283 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CDH4P55283 ATP5G2P1-201ENST00000433580 426 ntBASIC18.65■□□□□ 0.58
CDH4P55283 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.65■□□□□ 0.58
CDH4P55283 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.65■□□□□ 0.58
CDH4P55283 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.65■□□□□ 0.58
CDH4P55283 AC090616.6-201ENST00000582640 721 ntBASIC18.65■□□□□ 0.58
CDH4P55283 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.65■□□□□ 0.58
CDH4P55283 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.65■□□□□ 0.58
CDH4P55283 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CDH4P55283 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CDH4P55283 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.64■□□□□ 0.57
CDH4P55283 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
CDH4P55283 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.64■□□□□ 0.57
CDH4P55283 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.64■□□□□ 0.57
CDH4P55283 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.64■□□□□ 0.57
CDH4P55283 GUSBP12-201ENST00000513727 720 ntBASIC18.64■□□□□ 0.57
CDH4P55283 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.64■□□□□ 0.57
CDH4P55283 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.64■□□□□ 0.57
CDH4P55283 NPAP1P7-201ENST00000613027 823 ntBASIC18.64■□□□□ 0.57
CDH4P55283 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.64■□□□□ 0.57
CDH4P55283 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CDH4P55283 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.64■□□□□ 0.57
CDH4P55283 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH4P55283 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.63■□□□□ 0.57
CDH4P55283 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
CDH4P55283 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CDH4P55283 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.63■□□□□ 0.57
CDH4P55283 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.63■□□□□ 0.57
CDH4P55283 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.63■□□□□ 0.57
CDH4P55283 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CDH4P55283 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CDH4P55283 PHGDH-209ENST00000641074 1780 ntBASIC18.63■□□□□ 0.57
CDH4P55283 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.63■□□□□ 0.57
CDH4P55283 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH4P55283 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.62■□□□□ 0.57
CDH4P55283 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.62■□□□□ 0.57
CDH4P55283 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CDH4P55283 AP002383.4-201ENST00000442518 975 ntBASIC18.62■□□□□ 0.57
CDH4P55283 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 IGHV3-41-201ENST00000613121 348 ntBASIC18.62■□□□□ 0.57
CDH4P55283 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.62■□□□□ 0.57
CDH4P55283 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.62■□□□□ 0.57
CDH4P55283 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.62■□□□□ 0.57
CDH4P55283 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CDH4P55283 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CDH4P55283 LINC00602-201ENST00000629776 2065 ntBASIC18.62■□□□□ 0.57
CDH4P55283 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.62■□□□□ 0.57
CDH4P55283 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CDH4P55283 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.62■□□□□ 0.57
CDH4P55283 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CDH4P55283 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH4P55283 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms