Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
NUP98P52948 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
NUP98P52948 RPL13AP23-201ENST00000480739 586 ntBASIC22.68■■□□□ 1.22
NUP98P52948 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC22.68■■□□□ 1.22
NUP98P52948 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
NUP98P52948 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
NUP98P52948 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC22.68■■□□□ 1.22
NUP98P52948 PRKN-208ENST00000610470 531 ntTSL 2 BASIC22.68■■□□□ 1.22
NUP98P52948 PRKN-209ENST00000612485 225 ntTSL 5 BASIC22.68■■□□□ 1.22
NUP98P52948 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC22.68■■□□□ 1.22
NUP98P52948 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC22.68■■□□□ 1.22
NUP98P52948 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NUP98P52948 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NUP98P52948 AC093010.1-201ENST00000473625 1624 ntBASIC22.68■■□□□ 1.22
NUP98P52948 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
NUP98P52948 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC22.68■■□□□ 1.22
NUP98P52948 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
NUP98P52948 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
NUP98P52948 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
NUP98P52948 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
NUP98P52948 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
NUP98P52948 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC22.68■■□□□ 1.22
NUP98P52948 RPS2P1-201ENST00000434010 821 ntBASIC22.68■■□□□ 1.22
NUP98P52948 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC22.68■■□□□ 1.22
NUP98P52948 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
NUP98P52948 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC22.68■■□□□ 1.22
NUP98P52948 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
NUP98P52948 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC22.68■■□□□ 1.22
NUP98P52948 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NUP98P52948 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
NUP98P52948 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC22.67■■□□□ 1.22
NUP98P52948 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC22.67■■□□□ 1.22
NUP98P52948 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NUP98P52948 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC22.67■■□□□ 1.22
NUP98P52948 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC22.67■■□□□ 1.22
NUP98P52948 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NUP98P52948 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NUP98P52948 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NUP98P52948 OR7E14P-202ENST00000530490 1290 ntBASIC22.67■■□□□ 1.22
NUP98P52948 GPALPP1-207ENST00000611650 899 ntBASIC22.67■■□□□ 1.22
NUP98P52948 AC006538.3-201ENST00000612495 578 ntBASIC22.67■■□□□ 1.22
NUP98P52948 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NUP98P52948 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC22.67■■□□□ 1.22
NUP98P52948 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NUP98P52948 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC22.66■■□□□ 1.22
NUP98P52948 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NUP98P52948 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NUP98P52948 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC22.66■■□□□ 1.22
NUP98P52948 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC22.66■■□□□ 1.22
NUP98P52948 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC22.66■■□□□ 1.22
NUP98P52948 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NUP98P52948 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NUP98P52948 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC22.66■■□□□ 1.22
NUP98P52948 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC22.66■■□□□ 1.22
NUP98P52948 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC22.66■■□□□ 1.22
NUP98P52948 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
NUP98P52948 GMCL1P1-201ENST00000463439 1581 ntBASIC22.66■■□□□ 1.22
NUP98P52948 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC22.66■■□□□ 1.22
NUP98P52948 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC22.66■■□□□ 1.22
NUP98P52948 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NUP98P52948 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NUP98P52948 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
NUP98P52948 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC22.66■■□□□ 1.22
NUP98P52948 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
NUP98P52948 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
NUP98P52948 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC22.66■■□□□ 1.22
NUP98P52948 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC22.66■■□□□ 1.22
NUP98P52948 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC22.66■■□□□ 1.22
NUP98P52948 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
NUP98P52948 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC22.66■■□□□ 1.22
NUP98P52948 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NUP98P52948 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NUP98P52948 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NUP98P52948 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NUP98P52948 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC22.65■■□□□ 1.22
NUP98P52948 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC22.65■■□□□ 1.22
NUP98P52948 RAB17-203ENST00000409576 466 ntTSL 3 BASIC22.65■■□□□ 1.22
NUP98P52948 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC22.65■■□□□ 1.22
NUP98P52948 AC034105.1-201ENST00000563488 319 ntBASIC22.65■■□□□ 1.22
NUP98P52948 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NUP98P52948 AC008735.5-201ENST00000623544 497 ntBASIC22.65■■□□□ 1.22
NUP98P52948 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NUP98P52948 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
NUP98P52948 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NUP98P52948 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC22.65■■□□□ 1.22
NUP98P52948 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC22.65■■□□□ 1.22
NUP98P52948 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NUP98P52948 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC22.65■■□□□ 1.22
NUP98P52948 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NUP98P52948 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC22.65■■□□□ 1.22
NUP98P52948 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NUP98P52948 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
NUP98P52948 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC22.64■■□□□ 1.22
NUP98P52948 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
NUP98P52948 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
NUP98P52948 AL031598.1-201ENST00000561511 1773 ntBASIC22.64■■□□□ 1.22
NUP98P52948 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC22.64■■□□□ 1.22
NUP98P52948 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.22
NUP98P52948 CSF3-203ENST00000394148 622 ntTSL 3 BASIC22.64■■□□□ 1.22
NUP98P52948 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC22.64■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms