Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
PRKNO60260 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 MIR149-201ENST00000384879 89 ntBASIC17.01■□□□□ 0.31
PRKNO60260 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.01■□□□□ 0.31
PRKNO60260 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.01■□□□□ 0.31
PRKNO60260 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.01■□□□□ 0.31
PRKNO60260 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 RNF126P1-202ENST00000569893 925 ntBASIC17.01■□□□□ 0.31
PRKNO60260 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.01■□□□□ 0.31
PRKNO60260 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.01■□□□□ 0.31
PRKNO60260 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.01■□□□□ 0.31
PRKNO60260 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
PRKNO60260 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
PRKNO60260 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
PRKNO60260 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.01■□□□□ 0.31
PRKNO60260 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
PRKNO60260 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PRKNO60260 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PRKNO60260 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PRKNO60260 AC009102.3-201ENST00000623118 1491 ntBASIC17■□□□□ 0.31
PRKNO60260 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17■□□□□ 0.31
PRKNO60260 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17■□□□□ 0.31
PRKNO60260 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PRKNO60260 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PRKNO60260 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PRKNO60260 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
PRKNO60260 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17■□□□□ 0.31
PRKNO60260 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17■□□□□ 0.31
PRKNO60260 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17■□□□□ 0.31
PRKNO60260 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17■□□□□ 0.31
PRKNO60260 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17■□□□□ 0.31
PRKNO60260 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17■□□□□ 0.31
PRKNO60260 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17■□□□□ 0.31
PRKNO60260 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17■□□□□ 0.31
PRKNO60260 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17■□□□□ 0.31
PRKNO60260 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PRKNO60260 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
PRKNO60260 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17■□□□□ 0.31
PRKNO60260 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.99■□□□□ 0.31
PRKNO60260 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.99■□□□□ 0.31
PRKNO60260 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PRKNO60260 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.99■□□□□ 0.31
PRKNO60260 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PRKNO60260 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.99■□□□□ 0.31
PRKNO60260 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.99■□□□□ 0.31
PRKNO60260 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.99■□□□□ 0.31
PRKNO60260 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.99■□□□□ 0.31
PRKNO60260 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.99■□□□□ 0.31
PRKNO60260 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.99■□□□□ 0.31
PRKNO60260 AC009065.1-201ENST00000564055 1225 ntBASIC16.99■□□□□ 0.31
PRKNO60260 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.99■□□□□ 0.31
PRKNO60260 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.99■□□□□ 0.31
PRKNO60260 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.99■□□□□ 0.31
PRKNO60260 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.99■□□□□ 0.31
PRKNO60260 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PRKNO60260 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.99■□□□□ 0.31
PRKNO60260 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.99■□□□□ 0.31
PRKNO60260 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.99■□□□□ 0.31
PRKNO60260 LINC01126-201ENST00000623515 1646 ntBASIC16.99■□□□□ 0.31
PRKNO60260 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
PRKNO60260 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PRKNO60260 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PRKNO60260 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PRKNO60260 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
PRKNO60260 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PRKNO60260 AC007613.1-201ENST00000572811 2597 ntBASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms