Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.67■□□□□ 0.58
CBX4O00257 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.67■□□□□ 0.58
CBX4O00257 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CBX4O00257 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CBX4O00257 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.67■□□□□ 0.58
CBX4O00257 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CBX4O00257 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.67■□□□□ 0.58
CBX4O00257 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
CBX4O00257 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.67■□□□□ 0.58
CBX4O00257 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.67■□□□□ 0.58
CBX4O00257 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.67■□□□□ 0.58
CBX4O00257 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CBX4O00257 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CBX4O00257 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.67■□□□□ 0.58
CBX4O00257 AL138781.2-201ENST00000617896 1843 ntBASIC18.67■□□□□ 0.58
CBX4O00257 AC073592.3-201ENST00000625118 1834 ntBASIC18.67■□□□□ 0.58
CBX4O00257 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CBX4O00257 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.67■□□□□ 0.58
CBX4O00257 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.67■□□□□ 0.58
CBX4O00257 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CBX4O00257 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CBX4O00257 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CBX4O00257 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CBX4O00257 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CBX4O00257 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CBX4O00257 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.66■□□□□ 0.58
CBX4O00257 AL450487.1-201ENST00000426799 995 ntBASIC18.66■□□□□ 0.58
CBX4O00257 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
CBX4O00257 RNF126P1-202ENST00000569893 925 ntBASIC18.66■□□□□ 0.58
CBX4O00257 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.66■□□□□ 0.58
CBX4O00257 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.66■□□□□ 0.58
CBX4O00257 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CBX4O00257 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CBX4O00257 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CBX4O00257 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CBX4O00257 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CBX4O00257 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CBX4O00257 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CBX4O00257 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.66■□□□□ 0.58
CBX4O00257 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CBX4O00257 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.65■□□□□ 0.58
CBX4O00257 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CBX4O00257 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.65■□□□□ 0.58
CBX4O00257 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.65■□□□□ 0.58
CBX4O00257 AL024508.2-201ENST00000607749 1894 ntBASIC18.65■□□□□ 0.58
CBX4O00257 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX4O00257 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CBX4O00257 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CBX4O00257 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CBX4O00257 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CBX4O00257 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.65■□□□□ 0.58
CBX4O00257 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.65■□□□□ 0.58
CBX4O00257 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.65■□□□□ 0.58
CBX4O00257 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.65■□□□□ 0.58
CBX4O00257 AC069148.1-201ENST00000608741 768 ntBASIC18.65■□□□□ 0.58
CBX4O00257 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.65■□□□□ 0.58
CBX4O00257 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX4O00257 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CBX4O00257 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX4O00257 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX4O00257 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX4O00257 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CBX4O00257 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CBX4O00257 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.65■□□□□ 0.58
CBX4O00257 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.65■□□□□ 0.58
CBX4O00257 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.64■□□□□ 0.58
CBX4O00257 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
CBX4O00257 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CBX4O00257 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CBX4O00257 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.64■□□□□ 0.58
CBX4O00257 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.64■□□□□ 0.57
CBX4O00257 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 AC026396.1-201ENST00000419388 421 ntBASIC18.64■□□□□ 0.57
CBX4O00257 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.64■□□□□ 0.57
CBX4O00257 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CBX4O00257 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CBX4O00257 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.64■□□□□ 0.57
CBX4O00257 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.64■□□□□ 0.57
CBX4O00257 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.64■□□□□ 0.57
CBX4O00257 AC005332.3-201ENST00000589904 676 ntBASIC18.64■□□□□ 0.57
CBX4O00257 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms