Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 NEFHP1-201ENST00000412845 2629 ntBASIC19.67■□□□□ 0.74
CNTN3Q9P232 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CNTN3Q9P232 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CNTN3Q9P232 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CNTN3Q9P232 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CNTN3Q9P232 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CNTN3Q9P232 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CNTN3Q9P232 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CNTN3Q9P232 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.66■□□□□ 0.74
CNTN3Q9P232 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.66■□□□□ 0.74
CNTN3Q9P232 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.66■□□□□ 0.74
CNTN3Q9P232 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.66■□□□□ 0.74
CNTN3Q9P232 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CNTN3Q9P232 LINC00265-3P-201ENST00000447588 903 ntBASIC19.66■□□□□ 0.74
CNTN3Q9P232 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.66■□□□□ 0.74
CNTN3Q9P232 AC124864.1-201ENST00000623408 392 ntBASIC19.66■□□□□ 0.74
CNTN3Q9P232 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.66■□□□□ 0.74
CNTN3Q9P232 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CNTN3Q9P232 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.65■□□□□ 0.74
CNTN3Q9P232 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
CNTN3Q9P232 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.65■□□□□ 0.74
CNTN3Q9P232 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.65■□□□□ 0.74
CNTN3Q9P232 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.65■□□□□ 0.74
CNTN3Q9P232 KRT126P-201ENST00000549467 1181 ntBASIC19.65■□□□□ 0.74
CNTN3Q9P232 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.65■□□□□ 0.74
CNTN3Q9P232 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.65■□□□□ 0.74
CNTN3Q9P232 AC012313.10-201ENST00000623509 926 ntBASIC19.65■□□□□ 0.74
CNTN3Q9P232 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.65■□□□□ 0.74
CNTN3Q9P232 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CNTN3Q9P232 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CNTN3Q9P232 GMCL1P1-201ENST00000463439 1581 ntBASIC19.65■□□□□ 0.74
CNTN3Q9P232 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.65■□□□□ 0.74
CNTN3Q9P232 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CNTN3Q9P232 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.64■□□□□ 0.74
CNTN3Q9P232 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CNTN3Q9P232 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CNTN3Q9P232 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CNTN3Q9P232 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CNTN3Q9P232 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CNTN3Q9P232 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.64■□□□□ 0.73
CNTN3Q9P232 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 AC233702.3-201ENST00000578656 1387 ntBASIC19.64■□□□□ 0.73
CNTN3Q9P232 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CNTN3Q9P232 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CNTN3Q9P232 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.63■□□□□ 0.73
CNTN3Q9P232 AL138781.2-201ENST00000617896 1843 ntBASIC19.63■□□□□ 0.73
CNTN3Q9P232 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CNTN3Q9P232 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 AL845331.1-201ENST00000424978 1190 ntBASIC19.63■□□□□ 0.73
CNTN3Q9P232 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms