Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.16■□□□□ 0.5
VPS35Q96QK1 AL136038.3-201ENST00000561909 1096 ntBASIC18.16■□□□□ 0.5
VPS35Q96QK1 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.16■□□□□ 0.5
VPS35Q96QK1 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VPS35Q96QK1 AC008687.5-201ENST00000593746 558 ntBASIC18.16■□□□□ 0.5
VPS35Q96QK1 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS35Q96QK1 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS35Q96QK1 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
VPS35Q96QK1 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VPS35Q96QK1 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS35Q96QK1 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS35Q96QK1 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
VPS35Q96QK1 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS35Q96QK1 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 KRT89P-201ENST00000620027 1478 ntBASIC18.15■□□□□ 0.5
VPS35Q96QK1 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VPS35Q96QK1 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS35Q96QK1 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 MIR662-201ENST00000384847 95 ntBASIC18.15■□□□□ 0.5
VPS35Q96QK1 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VPS35Q96QK1 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS35Q96QK1 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS35Q96QK1 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS35Q96QK1 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS35Q96QK1 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
VPS35Q96QK1 AC005082.1-201ENST00000413042 2259 ntBASIC18.15■□□□□ 0.5
VPS35Q96QK1 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS35Q96QK1 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VPS35Q96QK1 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VPS35Q96QK1 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.14■□□□□ 0.5
VPS35Q96QK1 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 ARMC10P1-201ENST00000313754 855 ntBASIC18.14■□□□□ 0.49
VPS35Q96QK1 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 VENTXP5-201ENST00000523979 775 ntBASIC18.14■□□□□ 0.49
VPS35Q96QK1 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS35Q96QK1 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS35Q96QK1 AL024508.2-201ENST00000607749 1894 ntBASIC18.14■□□□□ 0.49
VPS35Q96QK1 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms