Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 RPS29-206ENST00000557111 488 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC88AQ3V6T2 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC88AQ3V6T2 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.33■■□□□ 1.17
CCDC88AQ3V6T2 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC22.33■■□□□ 1.17
CCDC88AQ3V6T2 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC22.33■■□□□ 1.17
CCDC88AQ3V6T2 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC22.33■■□□□ 1.17
CCDC88AQ3V6T2 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC88AQ3V6T2 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC22.33■■□□□ 1.17
CCDC88AQ3V6T2 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC88AQ3V6T2 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC22.33■■□□□ 1.16
CCDC88AQ3V6T2 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC88AQ3V6T2 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC88AQ3V6T2 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC88AQ3V6T2 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.16
CCDC88AQ3V6T2 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC88AQ3V6T2 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC88AQ3V6T2 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
CCDC88AQ3V6T2 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 TP73-AS1-210ENST00000637775 1455 ntBASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 CALY-203ENST00000368558 825 ntTSL 5 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 RNA5SP416-201ENST00000516838 111 ntBASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 AC112777.1-201ENST00000540175 1423 ntBASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 HLA-J-201ENST00000462773 1622 ntBASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 MEG3-211ENST00000452514 461 ntTSL 3 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 CFL1-202ENST00000524553 860 ntTSL 2 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 AL139288.1-201ENST00000623748 933 ntBASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC22.32■■□□□ 1.16
CCDC88AQ3V6T2 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 RPS15-207ENST00000591032 550 ntTSL 3 BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 MTDHP4-201ENST00000600287 670 ntBASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
CCDC88AQ3V6T2 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 DDT-206ENST00000430101 573 ntTSL 2 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 AP006288.1-201ENST00000446065 395 ntBASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 COPE-211ENST00000600932 1144 ntTSL 5 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms