Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 AP002982.1-201ENST00000492365 877 ntBASIC16.49■□□□□ 0.23
HLA-DPB1P04440 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DPB1P04440 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 AC068587.9-201ENST00000641814 219 ntBASIC16.48■□□□□ 0.23
HLA-DPB1P04440 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DPB1P04440 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 FLJ13224-201ENST00000313737 1514 ntBASIC16.47■□□□□ 0.23
HLA-DPB1P04440 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 RPS2P4-201ENST00000476944 856 ntBASIC16.47■□□□□ 0.23
HLA-DPB1P04440 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 RARRES2P10-201ENST00000564312 460 ntBASIC16.47■□□□□ 0.23
HLA-DPB1P04440 AF186192.3-201ENST00000583427 947 ntBASIC16.47■□□□□ 0.23
HLA-DPB1P04440 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DPB1P04440 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms