Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 AL591742.1-201ENST00000604433 565 ntBASIC13.8□□□□□ -0.2
HLA-DQA1P01909 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 AC112777.1-201ENST00000540175 1423 ntBASIC13.8□□□□□ -0.2
HLA-DQA1P01909 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DQA1P01909 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 PBX1-209ENST00000485769 834 ntTSL 2 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DQA1P01909 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 CICP6-201ENST00000457191 2729 ntBASIC13.78□□□□□ -0.2
HLA-DQA1P01909 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 NME9-203ENST00000383180 2133 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 HSCB-202ENST00000398941 955 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 KRT8P8-201ENST00000434750 1448 ntBASIC13.78□□□□□ -0.2
HLA-DQA1P01909 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DQA1P01909 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC13.77□□□□□ -0.2
HLA-DQA1P01909 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DQA1P01909 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DQA1P01909 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DQA1P01909 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms