Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AL645929.1-201ENST00000420084 975 ntBASIC17.04■□□□□ 0.32
PRKNO60260 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.04■□□□□ 0.32
PRKNO60260 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.04■□□□□ 0.32
PRKNO60260 AC091076.1-201ENST00000610741 619 ntBASIC17.04■□□□□ 0.32
PRKNO60260 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.04■□□□□ 0.32
PRKNO60260 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
PRKNO60260 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.04■□□□□ 0.32
PRKNO60260 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.04■□□□□ 0.32
PRKNO60260 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
PRKNO60260 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.04■□□□□ 0.32
PRKNO60260 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PRKNO60260 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PRKNO60260 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.03■□□□□ 0.32
PRKNO60260 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PRKNO60260 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.03■□□□□ 0.32
PRKNO60260 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
PRKNO60260 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PRKNO60260 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PRKNO60260 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PRKNO60260 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PRKNO60260 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
PRKNO60260 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PRKNO60260 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.03■□□□□ 0.32
PRKNO60260 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
PRKNO60260 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.03■□□□□ 0.32
PRKNO60260 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.03■□□□□ 0.32
PRKNO60260 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PRKNO60260 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PRKNO60260 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.03■□□□□ 0.32
PRKNO60260 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.03■□□□□ 0.32
PRKNO60260 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.03■□□□□ 0.32
PRKNO60260 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.03■□□□□ 0.32
PRKNO60260 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.03■□□□□ 0.32
PRKNO60260 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
PRKNO60260 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.03■□□□□ 0.32
PRKNO60260 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.03■□□□□ 0.32
PRKNO60260 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PRKNO60260 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PRKNO60260 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.03■□□□□ 0.32
PRKNO60260 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PRKNO60260 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 AL162741.1-201ENST00000565563 1558 ntBASIC17.02■□□□□ 0.32
PRKNO60260 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.02■□□□□ 0.32
PRKNO60260 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.32
PRKNO60260 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 MIR662-201ENST00000384847 95 ntBASIC17.02■□□□□ 0.32
PRKNO60260 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.02■□□□□ 0.32
PRKNO60260 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.02■□□□□ 0.32
PRKNO60260 UPK3BP1-201ENST00000428678 509 ntBASIC17.02■□□□□ 0.32
PRKNO60260 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
PRKNO60260 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.02■□□□□ 0.32
PRKNO60260 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.02■□□□□ 0.32
PRKNO60260 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.02■□□□□ 0.32
PRKNO60260 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.02■□□□□ 0.32
PRKNO60260 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.02■□□□□ 0.32
PRKNO60260 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.02■□□□□ 0.32
PRKNO60260 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PRKNO60260 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.02■□□□□ 0.31
PRKNO60260 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PRKNO60260 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
PRKNO60260 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
PRKNO60260 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
PRKNO60260 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PRKNO60260 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.02■□□□□ 0.31
PRKNO60260 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PRKNO60260 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PRKNO60260 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
PRKNO60260 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.01■□□□□ 0.31
PRKNO60260 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
PRKNO60260 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 ESPNP-201ENST00000270691 2015 ntBASIC17.01■□□□□ 0.31
PRKNO60260 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.01■□□□□ 0.31
PRKNO60260 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PRKNO60260 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms