Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 AC020763.4-201ENST00000623414 4170 ntBASIC17.93■□□□□ 0.46
VRK3Q8IV63 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 AL354751.1-201ENST00000412768 1863 ntBASIC17.93■□□□□ 0.46
VRK3Q8IV63 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VRK3Q8IV63 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VRK3Q8IV63 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 AL391807.1-203ENST00000604392 2365 ntBASIC17.93■□□□□ 0.46
VRK3Q8IV63 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VRK3Q8IV63 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 FAM8A6P-201ENST00000407496 1135 ntBASIC17.93■□□□□ 0.46
VRK3Q8IV63 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 HOMER2P1-201ENST00000455653 964 ntBASIC17.93■□□□□ 0.46
VRK3Q8IV63 AC092647.4-201ENST00000457211 535 ntBASIC17.93■□□□□ 0.46
VRK3Q8IV63 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VRK3Q8IV63 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VRK3Q8IV63 PHGDH-209ENST00000641074 1780 ntBASIC17.93■□□□□ 0.46
VRK3Q8IV63 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VRK3Q8IV63 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VRK3Q8IV63 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.93■□□□□ 0.46
VRK3Q8IV63 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 AC112907.2-201ENST00000448639 330 ntBASIC17.92■□□□□ 0.46
VRK3Q8IV63 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VRK3Q8IV63 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.92■□□□□ 0.46
VRK3Q8IV63 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 AL136038.4-201ENST00000603606 1261 ntBASIC17.91■□□□□ 0.46
VRK3Q8IV63 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VRK3Q8IV63 AL162741.1-201ENST00000565563 1558 ntBASIC17.91■□□□□ 0.46
VRK3Q8IV63 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.91■□□□□ 0.46
VRK3Q8IV63 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms