Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 AL354751.1-201ENST00000412768 1863 ntBASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.95■□□□□ 0.46
PTCHD3Q3KNS1 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 AC009947.2-201ENST00000444014 672 ntBASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 AL441883.1-201ENST00000566170 1045 ntBASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD3Q3KNS1 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 FAM8A6P-201ENST00000407496 1135 ntBASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
PTCHD3Q3KNS1 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 AL162741.1-201ENST00000565563 1558 ntBASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 AL359075.1-203ENST00000462729 1002 ntBASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 AC112497.1-201ENST00000624824 639 ntBASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 AL031432.5-201ENST00000641059 760 ntBASIC17.92■□□□□ 0.46
PTCHD3Q3KNS1 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms